{ "type": "genome", "identifier": "GCF_002886045.1", "organism": "Flavivirga eckloniae", "title": "Flavivirga eckloniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sunchon National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002886045.1", "bioproject": "PRJNA224116", "biosample": "SAMN08325534", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1803846", "species_taxid": "1803846", "organism_name": "Flavivirga eckloniae", "infraspecific_name": "strain=ECD14", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/17", "asm_name": "ASM288604v1", "asm_submitter": "Sunchon National University", "gbrs_paired_asm": "GCA_002886045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/886/045/GCF_002886045.1_ASM288604v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5665358", "genome_size_ungapped": "5665358", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002886045.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4631", "protein_coding_gene_count": "4559", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-17", "dateModified": "2018-01-17", "datePublished": "2018-01-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavivirga eckloniae" ], "sample_taxid": [ "1803846" ], "sample_host_organism": [ "Ecklonia cava" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.578 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5665358", "Number of Sequences": "1", "Longest Sequences (bp)": "5665358", "N50 (bp)": "5665358", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.9", "Number of CDSs": "4593", "Average Protein Length": "359.2", "Coding Ratio (%)": "87.4", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavivirga eckloniae", "strain": "strain=ECD14", "accession": "GCA_002886045.1", "taxid": 1803846, "species_taxid": 1803846, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1887, "total_fragments": 1888, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 81.3114, "matched_fragments": 869, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 80.4965, "matched_fragments": 844, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 78.5333, "matched_fragments": 388, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.4542, "matched_fragments": 411, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 78.393, "matched_fragments": 445, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 78.2762, "matched_fragments": 391, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 78.2586, "matched_fragments": 392, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 78.1841, "matched_fragments": 292, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 78.1602, "matched_fragments": 404, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, 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