{
    "type": "genome",
    "identifier": "GCF_002887775.1",
    "organism": "Streptococcus penaeicida",
    "title": "Streptococcus penaeicida",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CIAD, A.C.",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002887775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04311937",
        "wgs_master": "LOCM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1765960",
        "species_taxid": "1765960",
        "organism_name": "Streptococcus penaeicida",
        "infraspecific_name": "strain=CAIM 1838",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/17",
        "asm_name": "ASM288777v1",
        "asm_submitter": "CIAD, A.C.",
        "gbrs_paired_asm": "GCA_002887775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/887/775/GCF_002887775.1_ASM288777v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2051969",
        "genome_size_ungapped": "2051969",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "122",
        "contig_count": "122",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002887775.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "2134",
        "protein_coding_gene_count": "1781",
        "non_coding_gene_count": "121",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-17",
    "dateModified": "2018-01-17",
    "datePublished": "2018-01-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus penaeicida"
        ],
        "sample_taxid": [
            "1765960"
        ],
        "sample_host_organism": [
            "Penaeus vannamei"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Guatemala: Champerico"
        ],
        "sample_host_location_id": [],
        "data_size": "0.578 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2051969",
        "Number of Sequences": "122",
        "Longest Sequences (bp)": "300396",
        "N50 (bp)": "126448",
        "Gap Ratio (%)": "0.000097",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "2122",
        "Average Protein Length": "280.0",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "18",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Streptococcus penaeicida",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 656,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus bovimastitidis",
                "strain": "strain=NZ1587",
                "accession": "GCA_001885095.1",
                "taxid": 1856638,
                "species_taxid": 1856638,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2227,
                "matched_fragments": 555,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parauberis",
                "strain": "strain=NCFD 2020",
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                "taxid": 1348,
                "species_taxid": 1348,
                "relation_to_type": "type",
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                "ani": 81.0703,
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                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus uberis",
                "strain": "strain=NCTC3858",
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                "species_taxid": 1349,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3081,
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                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus porcinus",
                "strain": "strain=NCTC10999",
                "accession": "GCA_900475415.1",
                "taxid": 1340,
                "species_taxid": 1340,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2255,
                "matched_fragments": 328,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus pseudoporcinus",
                "strain": "strain=LQ 940-04",
                "accession": "GCA_000188035.3",
                "taxid": 361101,
                "species_taxid": 361101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9631,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus pseudoporcinus",
                "strain": "strain=NCTC13786",
                "accession": "GCA_900637075.1",
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                "species_taxid": 361101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9501,
                "matched_fragments": 327,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus canis",
                "strain": "strain=NCTC12191",
                "accession": "GCA_900636575.1",
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                "species_taxid": 1329,
                "relation_to_type": "type",
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                "ani": 79.2086,
                "matched_fragments": 172,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus vulneris",
                "strain": "strain=DM3B3",
                "accession": "GCA_019218685.1",
                "taxid": 2853160,
                "species_taxid": 2853160,
                "relation_to_type": "type",
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                "ani": 78.5133,
                "matched_fragments": 81,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus toyakuensis",
                "strain": "strain=TP1632",
                "accession": "GCA_024346585.1",
                "taxid": 2819619,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0407,
                "matched_fragments": 85,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus oriscaviae",
                "strain": "strain=HKU75",
                "accession": "GCA_018137985.1",
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                "relation_to_type": "type",
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                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parasuis",
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                "accession": "GCA_021654455.1",
                "taxid": 1501662,
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                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.8039,
                "matched_fragments": 81,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_002887775.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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                "min_intra_species_ani": "98.45",
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                "num_clustered_genomes": 24,
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            },
            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}