{ "type": "genome", "identifier": "GCF_002895435.1", "organism": "Aquimarina sediminis", "title": "Aquimarina sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002895435.1", "bioproject": "PRJNA224116", "biosample": "SAMN08295361", "wgs_master": "POYJ00000000.1", "refseq_category": "reference genome", "taxid": "2070536", "species_taxid": "2070536", "organism_name": "Aquimarina sediminis", "infraspecific_name": "strain=w01", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/23", "asm_name": "ASM289543v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_002895435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/895/435/GCF_002895435.1_ASM289543v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5838147", "genome_size_ungapped": "5838147", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002895435.1-RS_2024_10_22", "annotation_date": "2024-10-23", "total_gene_count": "4995", "protein_coding_gene_count": "4913", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-23", "dateModified": "2018-01-23", "datePublished": "2018-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquimarina sediminis" ], "sample_taxid": [ "2070536" ], "sample_host_organism": [ "Bass" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: weihai" ], "sample_host_location_id": [], "data_size": "1.626 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5838147", "Number of Sequences": "40", "Longest Sequences (bp)": "1021686", "N50 (bp)": "335231", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.3", "Number of CDSs": "4893", "Average Protein Length": "340.6", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquimarina sediminis", "strain": "strain=w01", "accession": "GCA_002895435.1", "taxid": 2070536, "species_taxid": 2070536, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1925, "total_fragments": 1926, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquimarina macrocephali", "strain": "strain=JAMB N27", "accession": "GCA_000520995.1", "taxid": 666563, "species_taxid": 666563, "relation_to_type": "type", "validated": true, "ani": 80.2203, "matched_fragments": 935, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina atlantica", "strain": "strain=22II-S11-z7", "accession": "GCA_000626715.1", "taxid": 1317122, "species_taxid": 1317122, "relation_to_type": "type", "validated": true, "ani": 80.1957, "matched_fragments": 937, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina megaterium", "strain": "strain=XH134", "accession": "GCA_000520975.1", "taxid": 1443666, "species_taxid": 1443666, "relation_to_type": "type", "validated": true, "ani": 80.1505, "matched_fragments": 960, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina longa", "strain": "strain=SW024", "accession": "GCA_001401755.1", "taxid": 1080221, "species_taxid": 1080221, "relation_to_type": "type", "validated": true, "ani": 79.5938, "matched_fragments": 749, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=KCTC 12285", "accession": "GCA_014651355.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 79.4333, "matched_fragments": 738, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=DSM 19832", "accession": "GCA_000430665.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 79.4246, "matched_fragments": 728, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina mytili", "strain": "strain=KCTC 23302", "accession": "GCA_016735115.1", "taxid": 874423, "species_taxid": 874423, "relation_to_type": "type", "validated": true, "ani": 78.7101, "matched_fragments": 585, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina aggregata", "strain": "strain=RZW4-3-2", "accession": "GCA_001632745.1", "taxid": 1642818, "species_taxid": 1642818, "relation_to_type": "type", "validated": true, "ani": 78.4488, "matched_fragments": 568, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter lacus", "strain": "strain=LM13S", "accession": "GCA_020164555.1", "taxid": 2873599, "species_taxid": 2873599, "relation_to_type": "type", "validated": true, "ani": 76.211, "matched_fragments": 84, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum holothuriorum", "strain": "strain=S2-2", "accession": "GCA_002120225.1", "taxid": 1635173, "species_taxid": 1635173, "relation_to_type": "type", "validated": true, "ani": 75.9289, "matched_fragments": 97, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 75.9216, "matched_fragments": 66, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, "relation_to_type": "type", "validated": true, "ani": 75.8807, "matched_fragments": 63, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 75.7502, "matched_fragments": 96, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 75.6716, "matched_fragments": 92, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002895435.1", "gtdb_species": "s__Aquimarina sediminis", "ani": 100.0, "matched_fragments": 1925, "total_fragments": 1926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900299525.1", "gtdb_species": "s__Aquimarina sp900299525", "ani": 80.2443, "matched_fragments": 946, "total_fragments": 1926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000520995.1", "gtdb_species": "s__Aquimarina macrocephali", "ani": 80.2077, "matched_fragments": 938, "total_fragments": 1926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.76", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.503, "cell_length": 0.521, "doubling_h": null, "growth_tmp": 27.904, "optimum_tmp": 28.416, "optimum_ph": 7.25, "genome_size": 5187855.2, "gc_content": 31.955, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.857, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aquimarina", "sediminis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }