{ "type": "genome", "identifier": "GCF_002895945.1", "organism": "Solilutibacter silvestris", "title": "Solilutibacter silvestris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biocant", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002895945.1", "bioproject": "PRJNA224116", "biosample": "SAMN07449825", "wgs_master": "NPZB00000000.1", "refseq_category": "reference genome", "taxid": "1645665", "species_taxid": "1645665", "organism_name": "Solilutibacter silvestris", "infraspecific_name": "strain=AM20-91", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/23", "asm_name": "ASM289594v1", "asm_submitter": "Biocant", "gbrs_paired_asm": "GCA_002895945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/895/945/GCF_002895945.1_ASM289594v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2847002", "genome_size_ungapped": "2847002", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002895945.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2638", "protein_coding_gene_count": "2546", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-23", "dateModified": "2018-01-23", "datePublished": "2018-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Solilutibacter silvestris" ], "sample_taxid": [ "1645665" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: South Tyrol, Montiggl" ], "sample_host_location_id": [], "data_size": "0.779 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2847002", "Number of Sequences": "3", "Longest Sequences (bp)": "1664168", "N50 (bp)": "1664168", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.4", "Number of CDSs": "2576", "Average Protein Length": "338.9", "Coding Ratio (%)": "92.0", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter silvestris", "strain": "strain=AM20-91", "accession": "GCA_002895945.1", "taxid": 1645665, "species_taxid": 1645665, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 945, "total_fragments": 947, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter oculi", "strain": "strain=83-4", "accession": "GCA_003293695.1", "taxid": 2698682, "species_taxid": 2698682, "relation_to_type": "type", "validated": true, "ani": 80.8308, "matched_fragments": 467, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 80.7173, "matched_fragments": 475, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrestris", "strain": "strain=II4", "accession": "GCA_014489475.1", "taxid": 2865112, "species_taxid": 2865112, "relation_to_type": "type", "validated": true, "ani": 80.0711, "matched_fragments": 460, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=LMG 19653", "accession": "GCA_006352395.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 80.0165, "matched_fragments": 379, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=DSM 13605", "accession": "GCA_004346265.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 79.9222, "matched_fragments": 389, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 79.906, "matched_fragments": 460, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 79.7921, "matched_fragments": 461, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas cucumeris", "strain": "strain=CGMCC 1.10821", "accession": "GCA_007830035.1", "taxid": 985012, "species_taxid": 985012, "relation_to_type": "type", "validated": true, "ani": 79.7579, "matched_fragments": 449, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 79.5588, "matched_fragments": 443, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 79.5053, "matched_fragments": 372, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter tolerans", "strain": "strain=UM1", "accession": "GCA_900155935.1", "taxid": 1604334, "species_taxid": 1604334, "relation_to_type": "type", "validated": true, "ani": 79.4953, "matched_fragments": 334, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 79.4927, "matched_fragments": 378, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas gilva", "strain": "strain=H23", "accession": "GCA_005239095.1", "taxid": 2572684, "species_taxid": 2572684, "relation_to_type": "type", "validated": true, "ani": 79.409, "matched_fragments": 434, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 79.3097, "matched_fragments": 426, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aestuarii", "strain": "strain=B9", "accession": "GCA_004357985.1", "taxid": 453837, "species_taxid": 453837, "relation_to_type": "type", "validated": true, "ani": 79.3076, "matched_fragments": 408, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 79.2814, "matched_fragments": 437, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 79.1812, "matched_fragments": 429, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas fraxinea", "strain": "strain=D4P002", "accession": "GCA_021233355.1", "taxid": 2901869, "species_taxid": 2901869, "relation_to_type": "type", "validated": true, "ani": 79.1719, "matched_fragments": 394, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas wuyuanensis", "strain": "strain=CGMCC 1.10978", "accession": "GCA_900215535.1", "taxid": 1073196, "species_taxid": 1073196, "relation_to_type": "type", "validated": true, "ani": 79.1171, "matched_fragments": 396, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas koreensis", "strain": "strain=KCTC 12208", "accession": "GCA_010093225.1", "taxid": 266061, "species_taxid": 266061, "relation_to_type": "type", "validated": true, "ani": 79.0069, "matched_fragments": 392, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas wuyuanensis", "strain": "strain=DSM 100640", "accession": "GCA_010093325.1", "taxid": 1073196, "species_taxid": 1073196, "relation_to_type": "type", "validated": true, "ani": 78.9953, "matched_fragments": 393, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas chelatiphaga", "strain": "strain=DSM 21508", "accession": "GCA_001431535.1", "taxid": 517011, "species_taxid": 517011, "relation_to_type": "type", "validated": true, "ani": 78.6164, "matched_fragments": 340, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002895945.1", "gtdb_species": "s__Lysobacter_B silvestris", "ani": 100.0, "matched_fragments": 945, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_018242425.1", "gtdb_species": "s__Lysobacter_B sp018242425", "ani": 86.3461, "matched_fragments": 691, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018242405.1", "gtdb_species": "s__Lysobacter_B sp018242405", "ani": 86.0471, "matched_fragments": 579, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018242465.1", "gtdb_species": "s__Lysobacter_B sp018242465", "ani": 84.9962, "matched_fragments": 612, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003293695.1", "gtdb_species": "s__Lysobacter_B oculi", "ani": 80.8397, "matched_fragments": 466, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006337105.1", "gtdb_species": "s__Thermomonas sp006337105", "ani": 80.7241, "matched_fragments": 474, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014395425.1", "gtdb_species": "s__Thermomonas brevis", "ani": 80.3642, "matched_fragments": 467, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007556775.1", "gtdb_species": "s__Thermomonas lycopersici", "ani": 80.3099, "matched_fragments": 437, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004357985.1", "gtdb_species": "s__Luteimonas aestuarii", "ani": 79.3075, "matched_fragments": 408, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001043115.1", "gtdb_species": "s__Xanthomonas_A sp001043115", "ani": 79.0511, "matched_fragments": 442, "total_fragments": 947, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.72", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Solilutibacter", "silvestris" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }