{ "type": "genome", "identifier": "GCF_002896965.1", "organism": "Novosphingobium guangzhouense", "title": "Novosphingobium guangzhouense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "G8", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002896965.1", "bioproject": "PRJNA224116", "biosample": "SAMN05004390", "wgs_master": "LYMM00000000.1", "refseq_category": "reference genome", "taxid": "1850347", "species_taxid": "1850347", "organism_name": "Novosphingobium guangzhouense", "infraspecific_name": "strain=SA925", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/24", "asm_name": "ASM289696v1", "asm_submitter": "G8", "gbrs_paired_asm": "GCA_002896965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/896/965/GCF_002896965.1_ASM289696v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5966702", "genome_size_ungapped": "5966702", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "116", "contig_count": "116", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002896965.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5648", "protein_coding_gene_count": "5486", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-24", "dateModified": "2018-01-24", "datePublished": "2018-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium guangzhouense" ], "sample_taxid": [ "1850347" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangzhou" ], "sample_host_location_id": [], "data_size": "1.666 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5966702", "Number of Sequences": "116", "Longest Sequences (bp)": "399200", "N50 (bp)": "143003", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "5508", "Average Protein Length": "320.1", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium guangzhouense", "strain": "strain=SA925", "accession": "GCA_002896965.1", "taxid": 1850347, "species_taxid": 1850347, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1925, "total_fragments": 1932, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium barchaimii", "strain": "strain=LL02", "accession": "GCA_001046635.1", "taxid": 1420591, "species_taxid": 1420591, "relation_to_type": "type", "validated": true, "ani": 82.0877, "matched_fragments": 932, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 82.0495, "matched_fragments": 828, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lindaniclasticum", "strain": "strain=LE124", "accession": "GCA_000445125.1", "taxid": 1329895, "species_taxid": 1329895, "relation_to_type": "type", "validated": true, "ani": 81.8374, "matched_fragments": 753, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium indicum", "strain": "strain=CGMCC 1.6784", "accession": "GCA_014645195.1", "taxid": 462949, "species_taxid": 462949, "relation_to_type": "type", "validated": true, "ani": 80.6508, "matched_fragments": 716, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 80.6068, "matched_fragments": 628, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 80.5244, "matched_fragments": 704, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium mathurense", "strain": "strain=SM117", "accession": "GCA_900168325.1", "taxid": 428990, "species_taxid": 428990, "relation_to_type": "type", "validated": true, "ani": 80.4658, "matched_fragments": 609, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000235975.2", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 80.4196, "matched_fragments": 599, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000767465.1", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 80.3646, "matched_fragments": 612, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium colocasiae", "strain": "strain=KCTC 32255", "accession": "GCA_014652555.1", "taxid": 1256513, "species_taxid": 1256513, "relation_to_type": "type", "validated": true, "ani": 80.3432, "matched_fragments": 561, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium endophyticum", "strain": "strain=CGMCC 1.15095", "accession": "GCA_014640675.1", "taxid": 1955250, "species_taxid": 1955250, "relation_to_type": "type", "validated": true, "ani": 80.0843, "matched_fragments": 569, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aureum", "strain": "strain=YJ-S2-02", "accession": "GCA_015865035.1", "taxid": 2792964, "species_taxid": 2792964, "relation_to_type": "type", "validated": true, "ani": 80.0527, "matched_fragments": 639, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", 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