{ "type": "genome", "identifier": "GCF_002899825.2", "organism": "Chryseobacterium phosphatilyticum", "title": "Chryseobacterium phosphatilyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002899825.2", "bioproject": "PRJNA224116", "biosample": "SAMN08324226", "wgs_master": "PPED00000000.2", "refseq_category": "reference genome", "taxid": "475075", "species_taxid": "475075", "organism_name": "Chryseobacterium phosphatilyticum", "infraspecific_name": "strain=ISE14", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/24", "asm_name": "ASM289982v2", "asm_submitter": "Korea university", "gbrs_paired_asm": "GCA_002899825.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/899/825/GCF_002899825.2_ASM289982v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5235650", "genome_size_ungapped": "5235250", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "131", "contig_count": "131", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002899825.2-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "4672", "protein_coding_gene_count": "4554", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-24", "dateModified": "2018-05-24", "datePublished": "2018-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium phosphatilyticum" ], "sample_taxid": [ "475075" ], "sample_host_organism": [ "cucumber" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Iksan" ], "sample_host_location_id": [], "data_size": "1.468 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5235650", "Number of Sequences": "131", "Longest Sequences (bp)": "1576022", "N50 (bp)": "1087456", "Gap Ratio (%)": "0.007640", "GCcontent (%)": "36.3", "Number of CDSs": "4505", "Average Protein Length": "333.8", "Coding Ratio (%)": "86.2", "Number of rRNAs": "4", "Number of tRNAs": "78", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium phosphatilyticum", "strain": "strain=ISE14", "accession": "GCA_002899825.2", "taxid": 475075, "species_taxid": 475075, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lactis", "strain": "strain=NCTC11390", "accession": "GCA_002899875.1", "taxid": 1241981, "species_taxid": 1241981, "relation_to_type": "type", "validated": true, "ani": 84.1348, "matched_fragments": 1284, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 83.0935, "matched_fragments": 1102, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 83.046, "matched_fragments": 1087, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium panacisoli", "strain": "strain=Gsoil 183", "accession": "GCA_008274625.1", "taxid": 1807141, "species_taxid": 1807141, "relation_to_type": "type", "validated": true, "ani": 82.8604, "matched_fragments": 1109, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 82.6745, "matched_fragments": 1052, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium nakagawai", "strain": "strain=NCTC13529", "accession": "GCA_900637665.1", "taxid": 1241982, "species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 82.6742, "matched_fragments": 1094, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aurantiacum", "strain": "strain=F30", "accession": "GCA_003020585.1", "taxid": 2116499, "species_taxid": 2116499, "relation_to_type": "type", "validated": true, "ani": 82.5962, "matched_fragments": 1023, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.2755, "matched_fragments": 682, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.1389, "matched_fragments": 713, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 79.9004, "matched_fragments": 710, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.0853, "matched_fragments": 591, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella carnis", "strain": "strain=G0081", "accession": "GCA_003860585.1", "taxid": 1241979, "species_taxid": 1241979, "relation_to_type": "type", "validated": true, "ani": 77.2874, "matched_fragments": 145, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002899825.2", "gtdb_species": "s__Chryseobacterium phosphatilyticum", "ani": 100.0, "matched_fragments": 1713, "total_fragments": 1714, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016025055.1", "gtdb_species": "s__Chryseobacterium indologenes", "ani": 85.4821, "matched_fragments": 1305, "total_fragments": 1714, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "98.65", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "phosphatilyticum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }