{ "type": "genome", "identifier": "GCF_002899895.1", "organism": "Chryseobacterium oncorhynchi", "title": "Chryseobacterium oncorhynchi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002899895.1", "bioproject": "PRJNA224116", "biosample": "SAMN08324236", "wgs_master": "PPEI00000000.2", "refseq_category": "reference genome", "taxid": "741074", "species_taxid": "741074", "organism_name": "Chryseobacterium oncorhynchi", "infraspecific_name": "strain=701B-08", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/24", "asm_name": "ASM289989v2", "asm_submitter": "Korea university", "gbrs_paired_asm": "GCA_002899895.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/899/895/GCF_002899895.1_ASM289989v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4794425", "genome_size_ungapped": "4794225", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002899895.1-RS_2024_08_04", "annotation_date": "2024-08-04", "total_gene_count": "4461", "protein_coding_gene_count": "4357", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-24", "dateModified": "2018-05-24", "datePublished": "2018-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium oncorhynchi" ], "sample_taxid": [ "741074" ], "sample_host_organism": [ "rainbow trout" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.338 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4794425", "Number of Sequences": "45", "Longest Sequences (bp)": "1271342", "N50 (bp)": "735093", "Gap Ratio (%)": "0.004172", "GCcontent (%)": "35.1", "Number of CDSs": "4294", "Average Protein Length": "323.6", "Coding Ratio (%)": "86.9", "Number of rRNAs": "3", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1586, "total_fragments": 1586, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_900156585.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 93.9599, "matched_fragments": 1345, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_003815775.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 93.9512, "matched_fragments": 1341, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aurantiacum", "strain": "strain=F30", "accession": "GCA_003020585.1", "taxid": 2116499, "species_taxid": 2116499, "relation_to_type": "type", "validated": true, "ani": 91.3927, "matched_fragments": 1321, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 84.3338, "matched_fragments": 1191, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 84.2681, "matched_fragments": 1128, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 84.1705, "matched_fragments": 1101, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 83.5839, "matched_fragments": 1078, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 83.5395, "matched_fragments": 1054, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.6019, "matched_fragments": 671, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.3838, "matched_fragments": 695, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.3031, "matched_fragments": 711, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.322, "matched_fragments": 597, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.1453, "matched_fragments": 514, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002899895.1", "gtdb_species": "s__Chryseobacterium oncorhynchi", "ani": 100.0, "matched_fragments": 1586, "total_fragments": 1586, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003815775.1", "gtdb_species": "s__Chryseobacterium joostei", "ani": 93.9512, "matched_fragments": 1341, "total_fragments": 1586, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "oncorhynchi" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }