{ "type": "genome", "identifier": "GCF_002899945.2", "organism": "Chryseobacterium viscerum", "title": "Chryseobacterium viscerum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002899945.2", "bioproject": "PRJNA224116", "biosample": "SAMN08324238", "wgs_master": "PPEG00000000.2", "refseq_category": "reference genome", "taxid": "1037377", "species_taxid": "1037377", "organism_name": "Chryseobacterium viscerum", "infraspecific_name": "strain=687B-08", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/24", "asm_name": "ASM289994v2", "asm_submitter": "Korea university", "gbrs_paired_asm": "GCA_002899945.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/899/945/GCF_002899945.2_ASM289994v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5693782", "genome_size_ungapped": "5693482", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002899945.2-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5137", "protein_coding_gene_count": "5019", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-24", "dateModified": "2018-05-24", "datePublished": "2018-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium viscerum" ], "sample_taxid": [ "1037377" ], "sample_host_organism": [ "rainbow trout" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.594 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5693782", "Number of Sequences": "60", "Longest Sequences (bp)": "791600", "N50 (bp)": "543073", "Gap Ratio (%)": "0.005269", "GCcontent (%)": "36.2", "Number of CDSs": "4980", "Average Protein Length": "328.0", "Coding Ratio (%)": "86.1", "Number of rRNAs": "3", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium viscerum", "strain": "strain=687B-08", "accession": "GCA_002899945.2", "taxid": 1037377, "species_taxid": 1037377, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1877, "total_fragments": 1879, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 87.2934, "matched_fragments": 1329, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium panacisoli", "strain": "strain=Gsoil 183", "accession": "GCA_008274625.1", "taxid": 1807141, "species_taxid": 1807141, "relation_to_type": "type", "validated": true, "ani": 87.1933, "matched_fragments": 1340, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 87.0369, "matched_fragments": 1327, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium candidae", "strain": "strain=JC507", "accession": "GCA_004916905.1", "taxid": 1978493, "species_taxid": 1978493, "relation_to_type": "type", "validated": true, "ani": 86.4119, "matched_fragments": 1203, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 86.2855, "matched_fragments": 1340, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aureum", "strain": "strain=17S1E7", "accession": "GCA_003971235.1", "taxid": 2497456, "species_taxid": 2497456, "relation_to_type": "type", "validated": true, "ani": 85.8001, "matched_fragments": 1325, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium culicis", "strain": "strain=DSM 23031", "accession": "GCA_900108365.1", "taxid": 680127, "species_taxid": 680127, "relation_to_type": "type", "validated": true, "ani": 85.5962, "matched_fragments": 1296, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=ATCC 35910", "accession": "GCA_000143785.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 85.5603, "matched_fragments": 1294, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=FDAARGOS_1103", "accession": "GCA_016766875.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 85.56, "matched_fragments": 1306, "total_fragments": 1879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", 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