{
    "type": "genome",
    "identifier": "GCF_002900965.1",
    "organism": "Pseudotabrizicola formosa",
    "title": "Pseudotabrizicola formosa",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University,Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002900965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08162812",
        "wgs_master": "PJOM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2030009",
        "species_taxid": "2030009",
        "organism_name": "Pseudotabrizicola formosa",
        "infraspecific_name": "strain=XJSP",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/26",
        "asm_name": "ASM290096v1",
        "asm_submitter": "Shandong University,Weihai",
        "gbrs_paired_asm": "GCA_002900965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/900/965/GCF_002900965.1_ASM290096v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3702758",
        "genome_size_ungapped": "3702758",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "14",
        "contig_count": "14",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002900965.1-RS_2024_07_08",
        "annotation_date": "2024-07-08",
        "total_gene_count": "3563",
        "protein_coding_gene_count": "3488",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-26",
    "dateModified": "2018-01-26",
    "datePublished": "2018-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudotabrizicola formosa"
        ],
        "sample_taxid": [
            "2030009"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xinjiang, Sayram Lake"
        ],
        "sample_host_location_id": [],
        "data_size": "1.023 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3702758",
        "Number of Sequences": "14",
        "Longest Sequences (bp)": "1520968",
        "N50 (bp)": "812613",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.4",
        "Number of CDSs": "3523",
        "Average Protein Length": "318.4",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tabrizicola sediminis",
                "strain": "strain=DRYC-M-16",
                "accession": "GCA_004745575.1",
                "taxid": 2486418,
                "species_taxid": 2486418,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1171,
                "matched_fragments": 999,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tabrizicola alkalilacus",
                "strain": "strain=DJC",
                "accession": "GCA_003443995.1",
                "taxid": 2305252,
                "species_taxid": 2305252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2753,
                "matched_fragments": 948,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tabrizicola algicola",
                "strain": "strain=ETT8",
                "accession": "GCA_010915705.1",
                "taxid": 2709381,
                "species_taxid": 2709381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2993,
                "matched_fragments": 868,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter aquatilis",
                "strain": "strain=DSM 3857",
                "accession": "GCA_900110025.1",
                "taxid": 933059,
                "species_taxid": 933059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7234,
                "matched_fragments": 554,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter fulva",
                "strain": "strain=con5",
                "accession": "GCA_018798885.1",
                "taxid": 2840474,
                "species_taxid": 2840474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6308,
                "matched_fragments": 622,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter amnigenus",
                "strain": "strain=HSP-20",
                "accession": "GCA_019130055.1",
                "taxid": 2852097,
                "species_taxid": 2852097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.238,
                "matched_fragments": 538,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter amnigenus",
                "strain": "strain=HSP-20",
                "accession": "GCA_009908265.2",
                "taxid": 2852097,
                "species_taxid": 2852097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2246,
                "matched_fragments": 540,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter straminiformis",
                "strain": "strain=CAM-8",
                "accession": "GCA_014243445.1",
                "taxid": 2045119,
                "species_taxid": 2045119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.217,
                "matched_fragments": 521,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter ruber",
                "strain": "strain=CCP-1",
                "accession": "GCA_009908315.1",
                "taxid": 1985673,
                "species_taxid": 1985673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1545,
                "matched_fragments": 598,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter lutimaris",
                "strain": "strain=YJ-T1-11",
                "accession": "GCA_003570715.1",
                "taxid": 2306023,
                "species_taxid": 2306023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0107,
                "matched_fragments": 543,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter serpentinus",
                "strain": "strain=HB-1",
                "accession": "GCA_008973825.1",
                "taxid": 2652247,
                "species_taxid": 2652247,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9468,
                "matched_fragments": 506,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter thermarum",
                "strain": "strain=YIM 73036",
                "accession": "GCA_003574395.1",
                "taxid": 2670345,
                "species_taxid": 2670345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8748,
                "matched_fragments": 507,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter lanyuensis",
                "strain": "strain=KCTC 23714",
                "accession": "GCA_014652355.1",
                "taxid": 1054497,
                "species_taxid": 1054497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.793,
                "matched_fragments": 493,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudogemmobacter hezensis",
                "strain": "strain=D13-10-4-6",
                "accession": "GCA_013155295.1",
                "taxid": 2737662,
                "species_taxid": 2737662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1962,
                "matched_fragments": 412,
                "total_fragments": 1225,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002900965.1",
                "gtdb_species": "s__ETT8 sp002900965",
                "ani": 100.0,
                "matched_fragments": 1223,
                "total_fragments": 1225,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ETT8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004745575.1",
                "gtdb_species": "s__ETT8 sp004745575",
                "ani": 88.1171,
                "matched_fragments": 999,
                "total_fragments": 1225,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ETT8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.69",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003443995.1",
                "gtdb_species": "s__ETT8 sp003443995",
                "ani": 85.2824,
                "matched_fragments": 947,
                "total_fragments": 1225,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ETT8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010915705.1",
                "gtdb_species": "s__ETT8 sp010915705",
                "ani": 83.3068,
                "matched_fragments": 867,
                "total_fragments": 1225,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ETT8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002794355.1",
                "gtdb_species": "s__ETT8 sp002794355",
                "ani": 83.196,
                "matched_fragments": 835,
                "total_fragments": 1225,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ETT8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016936395.1",
                "gtdb_species": "s__ETT8 sp016936395",
                "ani": 81.9475,
                "matched_fragments": 649,
                "total_fragments": 1225,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ETT8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Pseudotabrizicola",
        "formosa"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}