{
    "type": "genome",
    "identifier": "GCF_002901825.1",
    "organism": "Mammaliicoccus sciuri",
    "title": "Mammaliicoccus sciuri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Modernising Medical Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002901825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06177161",
        "wgs_master": "PPQD00000000.1",
        "refseq_category": "na",
        "taxid": "1296",
        "species_taxid": "1296",
        "organism_name": "Mammaliicoccus sciuri",
        "infraspecific_name": "strain=NCTC 12103",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/27",
        "asm_name": "ASM290182v1",
        "asm_submitter": "Modernising Medical Microbiology",
        "gbrs_paired_asm": "GCA_002901825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/901/825/GCF_002901825.1_ASM290182v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2768322",
        "genome_size_ungapped": "2767666",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "37",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-11",
        "total_gene_count": "2796",
        "protein_coding_gene_count": "2713",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-27",
    "dateModified": "2018-01-27",
    "datePublished": "2018-01-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mammaliicoccus sciuri"
        ],
        "sample_taxid": [
            "1296"
        ],
        "sample_host_organism": [
            "Sciurus carolinensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: London"
        ],
        "sample_host_location_id": [],
        "data_size": "0.768 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2768322",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "474731",
        "N50 (bp)": "316373",
        "Gap Ratio (%)": "0.023697",
        "GCcontent (%)": "32.5",
        "Number of CDSs": "2733",
        "Average Protein Length": "297.4",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mammaliicoccus sciuri",
                "strain": "strain=NCTC 12103",
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                "species_taxid": 1296,
                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Mammaliicoccus sciuri",
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                "accession": "GCA_001046995.1",
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                "species_taxid": 1296,
                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Mammaliicoccus sciuri",
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                "species_taxid": 1296,
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                "total_fragments": 911,
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                "status": "conclusive"
            },
            {
                "organism_name": "Mammaliicoccus vitulinus",
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                "species_taxid": 71237,
                "relation_to_type": "type",
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                "ani": 84.3989,
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                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mammaliicoccus fleurettii",
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                "accession": "GCA_003970575.1",
                "taxid": 150056,
                "species_taxid": 150056,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3605,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mammaliicoccus vitulinus",
                "strain": "strain=FDAARGOS_1207",
                "accession": "GCA_016889245.1",
                "taxid": 71237,
                "species_taxid": 71237,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.3353,
                "matched_fragments": 674,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mammaliicoccus fleurettii",
                "strain": "strain=NCTC13829",
                "accession": "GCA_900458505.1",
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                "species_taxid": 150056,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2757,
                "matched_fragments": 652,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Macrococcus armenti",
                "strain": "strain=JEK37",
                "accession": "GCA_020097135.1",
                "taxid": 2875764,
                "species_taxid": 2875764,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1723,
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                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002901825.1",
                "gtdb_species": "s__Mammaliicoccus sciuri",
                "ani": 100.0,
                "matched_fragments": 911,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Mammaliicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.65",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 216,
                "status": "conclusive"
            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Mammaliicoccus",
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                "min_intra_species_ani": "98.52",
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                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_003970575.1",
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                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Mammaliicoccus",
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                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_002902755.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Mammaliicoccus",
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            },
            {
                "accession": "GCF_002902525.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Mammaliicoccus",
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            },
            {
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                "matched_fragments": 177,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Macrococcus_B",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000010125.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "num_clustered_genomes": 167,
                "status": "-"
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        ]
    },
    "_bac2feature": {
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        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "motility": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Mammaliicoccus",
        "sciuri"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}