# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_65	LOCUS_00650	sequence005:6442..7383(+)	partial			WP_003404247.1	DsbA family protein	58.1	81.9	28.1
MGA_100	LOCUS_00980	sequence010:13470..15149(+)	internal_stop_codon	13398..13400(+)		WP_011082702.1	DNA internalization-related competence protein ComEC/Rec2	98.2	74.4	41.7
MGA_112	LOCUS_01100	sequence010:28168..28344(+)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	95.3
MGA_119	LOCUS_01150	sequence013:3410..3670(-)	partial			WP_011704248.1	AraC family transcriptional regulator	94.2	29.8	33.3
MGA_120	LOCUS_01160	sequence013:3642..3812(-)	partial			WP_099835063.1	IS3 family transposase	98.2	14.5	76.4
MGA_204	LOCUS_01980	sequence018:6974..7630(-)	partial			WP_001281154.1	alanine racemase	100.0	57.1	62.4
MGA_210	LOCUS_02030	sequence020:2241..2774(+)	frameshift		2735	WP_011837427.1	hypothetical protein	85.9	61.6	48.7
MGA_227	LOCUS_02180	sequence022:8509..8778(+)	partial			WP_000849352.1	PhzF family phenazine biosynthesis isomerase	95.5	29.1	58.6
MGA_262	LOCUS_02520	sequence024:20876..21208(-)	partial			WP_010922054.1	helix-turn-helix transcriptional regulator	98.2	45.5	49.6
MGA_283	LOCUS_02730	sequence024:30279..31055(+)	partial			WP_000111491.1	DUF3310 domain-containing protein	27.1	82.4	64.3
MGA_299	LOCUS_02890	sequence024:38724..39512(+)	partial			WP_225426975.1	Clp protease ClpP	65.6	70.6	45.1
MGA_311	LOCUS_03010	sequence024:45548..49351(+)	partial			WP_000504568.1	phage tail tape measure protein	88.5	65.8	32.5
MGA_313	LOCUS_03030	sequence024:50189..51754(+)	partial			WP_010989348.1	phage tail protein	43.6	56.9	38.3
MGA_315	LOCUS_03050	sequence024:51970..53925(+)	partial			WP_011030903.1	right-handed parallel beta-helix repeat-containing protein	59.8	70.5	22.9
MGA_322	LOCUS_03120	sequence024:57218..58636(+)	partial			WP_000861026.1	CHAP domain-containing protein	29.4	54.6	57.6
MGA_418	LOCUS_04080	sequence028:1963..2133(-)	partial			WP_000069098.1	NAD(P)H-dependent oxidoreductase	98.2	24.7	63.6
MGA_419	LOCUS_04090	sequence028:2197..2448(-)	partial			WP_001106006.1	IS6-like element IS257 family transposase	100.0	37.1	100.0
MGA_435	LOCUS_04250	sequence028:16682..18556(-)	partial			WP_002370472.1	glycosyltransferase family A protein	34.6	44.7	31.5
MGA_437	LOCUS_04270	sequence028:19988..20830(-)	frameshift		20859	WP_099835063.1	IS3 family transposase	100.0	73.7	84.6
MGA_438	LOCUS_04280	sequence028:20815..21129(-)	frameshift		20859	WP_099835063.1	IS3 family transposase	96.2	26.3	80.0
MGA_446	LOCUS_04350	sequence029:350..505(-)	internal_stop_codon	647..649(-)		WP_128721742.1	IS3 family transposase	94.1	12.8	68.8
MGA_447	LOCUS_04360	sequence029:647..1150(-)	frameshift,internal_stop_codon	645..647(-)	1226,1139	WP_128721742.1	IS3 family transposase	94.0	41.9	39.5
MGA_463	LOCUS_04520	sequence029:9617..10828(-)	frameshift,internal_stop_codon	11002..11004(-)	11004	WP_011202675.1	DEAD/DEAH box helicase family protein	98.8	28.3	32.5
MGA_464	LOCUS_04530	sequence029:10978..11664(-)	frameshift		10986	WP_011015608.1	DEAD/DEAH box helicase	100.0	14.5	52.5
MGA_496	LOCUS_04810	sequence035:1501..1728(+)	frameshift		1677	WP_000157630.1	YeiH family protein	82.7	18.7	50.0
MGA_498	LOCUS_04830	sequence035:1848..2030(+)	frameshift,internal_stop_codon	2029..2031(+)	2109,2052,1677	WP_000157630.1	YeiH family protein	98.3	17.8	59.3
MGA_500	LOCUS_04850	sequence035:2233..2721(+)	frameshift		2706,2709	WP_011987094.1	YdcF family protein	92.6	44.2	30.8
MGA_501	LOCUS_04860	sequence035:2699..3121(+)	frameshift		2706,2709	WP_165379816.1	YdcF family protein	96.4	40.5	49.3
MGA_504	LOCUS_04890	sequence035:5450..5854(+)	partial			WP_011222005.1	protein rep	72.4	29.8	40.2
MGA_519	LOCUS_05030	sequence037:407..>1097(-)	partial			WP_002438349.1	magnesium transporter CorA family protein	98.7	72.1	72.2
MGA_524	LOCUS_05050	sequence040:1080..1670(-)	internal_stop_codon	1872..1874(-)		WP_100190734.1	IS3 family transposase	99.0	37.2	45.9
MGA_554	LOCUS_05290	sequence048:2461..2667(-)	partial			WP_001548522.1	TM2 domain-containing protein	94.1	69.6	71.9
MGA_623	LOCUS_05980	sequence049:49268..49915(+)	partial			WP_000070831.1	DUF4887 domain-containing protein	20.9	21.5	60.0
MGA_649	LOCUS_06230	sequence049:71903..72772(-)	frameshift		72885	WP_001830321.1	multidrug efflux MFS transporter NorA	97.9	73.6	37.0
MGA_650	LOCUS_06240	sequence049:72880..73041(-)	frameshift		72885	WP_001041274.1	multidrug efflux MFS transporter NorA	88.7	12.1	55.3
MGA_715	LOCUS_06840	sequence059:4292..4570(+)	frameshift,internal_stop_codon	4756..4758(+)	4177,4276,4069,4694,4558	WP_000283016.1	Y-family DNA polymerase	90.2	19.8	39.8
MGA_769	LOCUS_07360	sequence062:879..1250(+)	partial			WP_003573966.1	Hsp20/alpha crystallin family protein	70.7	56.3	33.7
MGA_770	LOCUS_07370	sequence062:1292..1723(+)	partial			WP_003573966.1	Hsp20/alpha crystallin family protein	74.8	68.4	43.5
MGA_781	LOCUS_07440	sequence067:768..1151(+)	partial			WP_186433708.1	arsenite efflux transporter membrane subunit ArsB	87.4	25.8	82.9
MGA_784	LOCUS_07470	sequence067:3129..3572(-)	partial			WP_001042403.1	McrB family protein	86.4	20.2	57.7
MGA_808	LOCUS_07700	sequence071:2868..3104(-)	frameshift		3222	WP_001103516.1	GNAT family N-acetyltransferase	98.7	49.7	57.1
MGA_813	LOCUS_07750	sequence072:131..403(+)	internal_stop_codon	401..403(+)		WP_002485461.1	CDP-glycerol glycerophosphotransferase family protein	98.9	11.5	56.2
MGA_816	LOCUS_07760	sequence075:364..978(-)	partial			WP_004524980.1	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase	84.8	37.0	39.3
MGA_849	LOCUS_08040	sequence083:327..485(-)	partial			WP_001830756.1	hypothetical protein	57.7	65.2	83.3
MGA_893	LOCUS_08350	sequence096:669..>1496(-)	partial			WP_011704992.1	inverse autotransporter beta-barrel domain-containing protein	40.0	12.0	42.5
MGA_897	LOCUS_08370	sequence099:570..1130(-)	partial			WP_011948703.1	LysR family transcriptional regulator	79.6	50.2	45.6
MGA_899	LOCUS_08390	sequence099:1411..2154(+)	frameshift		1411	WP_010970414.1	L-proline cis-4-hydroxylase	91.9	78.9	31.4
MGA_917	LOCUS_08530	sequence102:1212..3629(-)	frameshift		1229	WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	73.2	60.8	35.6
MGA_991	LOCUS_09260	sequence105:255..434(-)	partial			WP_001100682.1	hypothetical protein	74.6	24.6	54.5
MGA_995	LOCUS_09300	sequence105:3619..4245(+)	frameshift		4221	WP_164690658.1	2-dehydropantoate 2-reductase	97.1	64.3	62.4
MGA_996	LOCUS_09310	sequence105:4217..4540(+)	frameshift		4224	WP_164690658.1	2-dehydropantoate 2-reductase	98.1	33.4	56.2
MGA_1002	LOCUS_09370	sequence105:9811..10575(-)	frameshift		10595	WP_002901609.1	PEP phosphonomutase	99.2	84.6	67.1
MGA_1028	LOCUS_09630	sequence106:15437..>16146(-)	partial			WP_001829926.1	lytic transglycosylase	96.6	63.2	33.9
MGA_1142	LOCUS_10750	sequence113:28789..29319(-)	partial			WP_000232511.1	RNA-binding protein	98.9	64.9	71.3
MGA_1149	LOCUS_10820	sequence113:34985..35875(-)	partial			WP_002470268.1	FtsQ-type POTRA domain-containing protein	99.7	63.5	54.9
MGA_1219	LOCUS_11520	sequence117:2146..2874(-)	internal_stop_codon	2146..2148(-)		WP_002469351.1	MDR family MFS transporter	100.0	50.5	76.4
MGA_1234	LOCUS_11670	sequence117:16395..17252(-)	frameshift		17440	WP_001829750.1	MFS transporter	96.8	70.2	59.1
MGA_1308	LOCUS_12400	sequence121:7677..8333(+)	partial			WP_011142031.1	hypothetical protein	81.2	72.1	30.2
MGA_1317	LOCUS_12470	sequence122:497..1063(-)	partial			WP_002456715.1	DUF4064 domain-containing protein	69.1	65.8	39.2
MGA_1319	LOCUS_12490	sequence122:1659..3092(-)	partial			WP_000678077.1	YhgE/Pip family protein	52.6	24.6	31.9
MGA_1409	LOCUS_13360	sequence126:30912..31544(+)	internal_stop_codon	31542..31544(+)		WP_001022089.1	2-keto-3-deoxygluconate permease 1	98.6	58.0	44.7
MGA_1415	LOCUS_13420	sequence126:36273..37460(-)	partial			WP_124797038.1	putative glycoside hydrolase	87.3	72.4	37.8
MGA_1424	LOCUS_13500	sequence127:10855..11199(+)	partial			WP_083485680.1	metalloregulator ArsR/SmtB family transcription factor	73.7	79.2	39.3
MGA_1435	LOCUS_13610	sequence128:5327..6082(+)	partial			WP_011861991.1	ATP-binding cassette domain-containing protein	91.2	69.8	51.9
MGA_1443	LOCUS_13690	sequence128:14381..14722(+)	internal_stop_codon	14720..14722(+)		WP_000668894.1	acetylglutamate kinase	99.1	44.1	50.9
MGA_1477	LOCUS_14030	sequence129:35783..36265(+)	partial			WP_002440170.1	A24 family peptidase	93.8	63.1	30.7
MGA_1486	LOCUS_14120	sequence130:2694..3359(-)	partial			WP_010990043.1	1,4-beta-N-acetylmuramoylhydrolase	71.9	33.7	36.7
MGA_1487	LOCUS_14130	sequence130:3353..4009(-)	frameshift		3361	WP_010990014.1	autolysin Ami	58.7	14.1	52.3
MGA_1549	LOCUS_14750	sequence133:32176..32868(-)	frameshift		32229	WP_001829282.1	competence protein CoiA family protein	85.7	59.8	38.3
MGA_1755	LOCUS_16810	sequence140:1265..1669(+)	partial			WP_011970650.1	SRPBCC family protein	83.6	72.0	30.6
MGA_1757	LOCUS_16830	sequence140:2253..3089(+)	internal_stop_codon	3087..3089(+)		WP_000860592.1	FAD-containing oxidoreductase	100.0	63.2	64.0
MGA_1758	LOCUS_16840	sequence140:3105..3575(+)	internal_stop_codon	3087..3089(+)		WP_002484563.1	FAD-containing oxidoreductase	97.4	34.3	77.0
MGA_1788	LOCUS_17140	sequence140:30137..30418(+)	frameshift,internal_stop_codon	30041..30043(+),30416..30418(+),30032..30034(+),30089..30091(+)	30424	WP_001293088.1	terminase small subunit	100.0	49.2	66.7
MGA_1867	LOCUS_17900	sequence146:27479..>28348(-)	partial			WP_001832647.1	AI-2E family transporter	98.6	70.4	67.4
MGA_1889	LOCUS_18120	sequence147:24250..24879(+)	frameshift		24238	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	97.6	44.2	69.6
MGA_1890	LOCUS_18130	sequence147:25009..25191(-)	internal_stop_codon	25207..25209(-)		WP_010906208.1	GNAT family N-acetyltransferase	83.3	29.8	58.0
MGA_1891	LOCUS_18140	sequence147:25207..25509(-)	internal_stop_codon	25207..25209(-)		WP_000351212.1	GNAT family N-acetyltransferase	98.0	58.2	33.0
MGA_1901	LOCUS_18240	sequence148:93..680(+)	frameshift		632	WP_000229037.1	cyclopropane-fatty-acyl-phospholipid synthase	92.3	45.6	48.3
MGA_1902	LOCUS_18250	sequence148:629..1288(+)	frameshift		632,406	WP_011986159.1	cyclopropane-fatty-acyl-phospholipid synthase family protein	98.2	55.1	59.7
MGA_1924	LOCUS_18470	sequence149:6816..7058(-)	partial			WP_002365289.1	PucR family transcriptional regulator ligand-binding domain-containing protein	90.0	13.3	50.0
MGA_1925	LOCUS_18480	sequence149:7226..8434(-)	frameshift		7255	WP_002365289.1	PucR family transcriptional regulator ligand-binding domain-containing protein	98.8	74.9	31.0
MGA_1934	LOCUS_18570	sequence149:18909..19517(+)	frameshift		19472	WP_010706746.1	ureidoglycolate dehydrogenase	94.1	53.3	57.4
MGA_1935	LOCUS_18580	sequence149:19444..19941(+)	frameshift		19475	WP_010706746.1	ureidoglycolate dehydrogenase	93.9	43.9	60.0
MGA_1937	LOCUS_18600	sequence149:21163..22923(+)	frameshift		22908	WP_010706747.1	DUF1116 domain-containing protein	99.1	57.9	50.4
MGA_1938	LOCUS_18610	sequence149:22925..24190(+)	frameshift		22908	WP_010706747.1	DUF1116 domain-containing protein	98.1	41.4	68.3
MGA_1940	LOCUS_18630	sequence149:24971..25399(+)	frameshift		25393	WP_010868005.1	carbamate kinase	99.3	45.5	46.9
MGA_1941	LOCUS_18640	sequence149:25420..25917(+)	frameshift		25393	WP_011251108.1	carbamate kinase	97.0	51.1	53.9
MGA_1983	LOCUS_19060	sequence150:33591..34142(-)	partial			WP_000701483.1	DNA-directed RNA polymerase subunit delta	70.5	73.3	75.2
MGA_2005	LOCUS_19270	sequence153:1577..1822(-)	frameshift		1905	WP_001831524.1	2,3-butanediol dehydrogenase	100.0	23.1	75.3
MGA_2006	LOCUS_19280	sequence153:1900..2280(-)	frameshift		1905	WP_001831524.1	2,3-butanediol dehydrogenase	97.6	35.1	78.0
MGA_2010	LOCUS_19320	sequence153:5701..6003(+)	frameshift		5994	WP_000608192.1	hypothetical protein	98.0	56.1	80.6
MGA_2011	LOCUS_19330	sequence153:5975..6226(+)	frameshift		5994	WP_000608192.1	hypothetical protein	98.8	47.4	68.3
MGA_2014	LOCUS_19360	sequence153:9314..9667(-)	partial			WP_000848986.1	DUF536 domain-containing protein	84.6	37.9	64.0
MGA_2050	LOCUS_19700	sequence158:13160..13507(-)	partial			WP_001183201.1	MFS transporter	96.5	25.7	30.7
MGA_2063	LOCUS_19830	sequence158:25170..25757(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	69.7	77.1	32.1
MGA_2067	LOCUS_19870	sequence158:28758..31274(-)	partial			WP_010905630.1	CDP-glycerol glycerophosphotransferase family protein	73.3	76.2	36.9
MGA_2073	LOCUS_19930	sequence158:35790..>36324(-)	partial			WP_010905629.1	XcbB/CpsF family capsular polysaccharide biosynthesis protein	90.4	29.3	34.0
MGA_2113	LOCUS_20330	sequence161:1991..2998(+)	partial			WP_000526910.1	3'-5' exonuclease	45.1	47.3	40.4
MGA_2114	LOCUS_20340	sequence161:3242..3532(+)	frameshift		3505,3749	WP_047210621.1	site-specific integrase	92.7	21.9	79.8
MGA_2115	LOCUS_20350	sequence161:3519..3782(+)	frameshift		3505,3749	WP_047210621.1	site-specific integrase	88.5	18.9	84.4
MGA_2139	LOCUS_20590	sequence161:26965..27156(-)	internal_stop_codon	27310..27312(-)		WP_001830097.1	FtsW/RodA/SpoVE family cell cycle protein	93.7	14.5	54.2
MGA_2250	LOCUS_21680	sequence167:17285..17782(+)	partial			WP_047210621.1	site-specific integrase	81.2	32.4	48.9
MGA_2256	LOCUS_21740	sequence169:502..1347(+)	partial			WP_186433708.1	arsenite efflux transporter membrane subunit ArsB	38.1	24.9	99.1
MGA_2267	LOCUS_21850	sequence170:1..916(+)	partial			WP_049387514.1	MSCRAMM-like protein SdrH	92.1	62.8	34.3
MGA_2303	LOCUS_22200	sequence172:16231..16896(-)	frameshift		16903	WP_001831131.1	competence type IV pilus assembly protein ComGB	100.0	62.3	45.2
MGA_2304	LOCUS_22210	sequence172:16862..17299(-)	frameshift		16906	WP_001831131.1	competence type IV pilus assembly protein ComGB	91.0	37.2	42.4
MGA_2400	LOCUS_23150	sequence174:67075..67512(+)	partial			WP_002456715.1	DUF4064 domain-containing protein	94.5	67.3	29.9
MGA_2486	LOCUS_24010	sequence175:3046..4509(+)	partial			WP_000069289.1	elastin-binding protein EbpS	16.4	16.5	63.0
MGA_2506	LOCUS_24200	sequence176:20285..21085(-)	partial			WP_000827010.1	hypothetical protein	41.4	53.9	50.9
MGA_2518	LOCUS_24320	sequence176:31600..31878(-)	internal_stop_codon	31918..31920(-)		WP_002209403.1	erythritol/L-threitol dehydrogenase	100.0	24.8	73.9
MGA_2519	LOCUS_24330	sequence176:31918..32682(-)	internal_stop_codon	31918..31920(-)		WP_002209403.1	erythritol/L-threitol dehydrogenase	97.2	66.3	73.3
MGA_2527	LOCUS_24400	sequence177:870..2189(+)	partial			WP_014205999.1	type I restriction endonuclease subunit R	76.3	33.7	26.4
MGA_2546	LOCUS_24590	sequence178:17092..17457(+)	internal_stop_codon	16837..16839(+)		WP_001044441.1	M23 family metallopeptidase	69.4	29.6	46.4
MGA_2593	LOCUS_25060	sequence180:2098..2418(+)	partial			WP_001830573.1	glycerol dehydrogenase	90.6	26.4	47.4
MGA_2599	LOCUS_25120	sequence181:2391..3428(-)	partial			WP_011016371.1	DEAD/DEAH box helicase	81.7	27.6	45.8
MGA_2622	LOCUS_25350	sequence182:12575..12766(+)	partial			WP_001085655.1	30S ribosomal protein S14	100.0	70.8	93.7
MGA_2638	LOCUS_25510	sequence182:30439..30612(+)	partial			WP_000093392.1	IS200/IS605 family transposase	52.6	18.6	96.7
MGA_2649	LOCUS_25600	sequence184:3748..3885(+)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_2672	LOCUS_25830	sequence189:4215..>7359(-)	partial			WP_001074534.1	glucosaminidase domain-containing protein	70.3	59.7	44.9