{
    "type": "genome",
    "identifier": "GCF_002902235.1",
    "organism": "Staphylococcus ureilyticus",
    "title": "Staphylococcus ureilyticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Modernising Medical Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002902235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05977987",
        "wgs_master": "PPRL00000000.1",
        "refseq_category": "na",
        "taxid": "94138",
        "species_taxid": "94138",
        "organism_name": "Staphylococcus ureilyticus",
        "infraspecific_name": "strain=DSM 6718",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/27",
        "asm_name": "ASM290223v1",
        "asm_submitter": "Modernising Medical Microbiology",
        "gbrs_paired_asm": "GCA_002902235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/902/235/GCF_002902235.1_ASM290223v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2670427",
        "genome_size_ungapped": "2669810",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "189",
        "contig_count": "189",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002902235.1-RS_2024_08_04",
        "annotation_date": "2024-08-04",
        "total_gene_count": "2683",
        "protein_coding_gene_count": "2538",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-27",
    "dateModified": "2018-01-27",
    "datePublished": "2018-01-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus ureilyticus"
        ],
        "sample_taxid": [
            "94138"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.752 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2670427",
        "Number of Sequences": "189",
        "Longest Sequences (bp)": "167605",
        "N50 (bp)": "32673",
        "Gap Ratio (%)": "0.023105",
        "GCcontent (%)": "32.5",
        "Number of CDSs": "2574",
        "Average Protein Length": "282.2",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Staphylococcus ureilyticus",
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                "species_taxid": 94138,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 808,
                "total_fragments": 812,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus cohnii subsp. cohnii",
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                "accession": "GCA_002902365.1",
                "taxid": 74704,
                "species_taxid": 29382,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 92.2152,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus cohnii",
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                "ani": 92.1529,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus cohnii subsp. barensis",
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                "accession": "GCA_014180735.1",
                "taxid": 2834574,
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                "relation_to_type": "type",
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                "ani": 91.8612,
                "matched_fragments": 739,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus nepalensis",
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                "accession": "GCA_900458695.1",
                "taxid": 214473,
                "species_taxid": 214473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2393,
                "matched_fragments": 665,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus shinii",
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                "accession": "GCA_017583065.1",
                "taxid": 2912228,
                "species_taxid": 2912228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4818,
                "matched_fragments": 480,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus succinus subsp. succinus",
                "strain": "strain=DSM 14617",
                "accession": "GCA_001006765.1",
                "taxid": 224030,
                "species_taxid": 61015,
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                "validated": true,
                "ani": 80.1119,
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                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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            },
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                "num_clustered_genomes": 23,
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            },
            {
                "accession": "GCF_900458565.1",
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    "quality": 4,
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}