{
    "type": "genome",
    "identifier": "GCF_002902325.1",
    "organism": "Staphylococcus capitis subsp. capitis",
    "title": "Staphylococcus capitis subsp. capitis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Modernising Medical Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002902325.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06177166",
        "wgs_master": "PPPY00000000.1",
        "refseq_category": "na",
        "taxid": "72758",
        "species_taxid": "29388",
        "organism_name": "Staphylococcus capitis subsp. capitis",
        "infraspecific_name": "strain=NCTC 11045",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/27",
        "asm_name": "ASM290232v1",
        "asm_submitter": "Modernising Medical Microbiology",
        "gbrs_paired_asm": "GCA_002902325.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/902/325/GCF_002902325.1_ASM290232v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2434909",
        "genome_size_ungapped": "2434183",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "51",
        "contig_count": "51",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002902325.1-RS_2024_09_03",
        "annotation_date": "2024-09-03",
        "total_gene_count": "2429",
        "protein_coding_gene_count": "2256",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-27",
    "dateModified": "2018-01-27",
    "datePublished": "2018-01-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus capitis subsp. capitis"
        ],
        "sample_taxid": [
            "72758"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: London"
        ],
        "sample_host_location_id": [],
        "data_size": "0.680 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2434909",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "932042",
        "N50 (bp)": "850133",
        "Gap Ratio (%)": "0.029816",
        "GCcontent (%)": "32.7",
        "Number of CDSs": "2405",
        "Average Protein Length": "286.5",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Staphylococcus capitis subsp. capitis",
                "strain": "strain=NCTC 11045",
                "accession": "GCA_002902325.1",
                "taxid": 72758,
                "species_taxid": 29388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 790,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus capitis",
                "strain": "strain=CCM 2734",
                "accession": "GCA_014635765.1",
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                "species_taxid": 29388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9879,
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                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus capitis",
                "strain": "strain=NCTC11045",
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                "species_taxid": 29388,
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                "validated": true,
                "ani": 99.9867,
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                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus capitis subsp. capitis",
                "strain": "strain=DSM 20326",
                "accession": "GCA_025272975.1",
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                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus capitis subsp. urealyticus",
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                "accession": "GCA_002901925.1",
                "taxid": 74703,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 96.58,
                "matched_fragments": 715,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus taiwanensis",
                "strain": "strain=NTUH-S172",
                "accession": "GCA_020544305.1",
                "taxid": 2750012,
                "species_taxid": 2750012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4959,
                "matched_fragments": 379,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002902325.1",
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                "matched_fragments": 790,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "96.40",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 151,
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            },
            {
                "accession": "GCF_002902725.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.57",
                "min_intra_species_ani": "98.10",
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                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_900458815.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
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                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_006742205.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "96.59",
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            },
            {
                "accession": "GCF_900636385.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
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                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 73,
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            },
            {
                "accession": "GCF_003970495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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            },
            {
                "accession": "GCF_003491325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "mean_intra_species_ani": "99.32",
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            },
            {
                "accession": "GCF_004785665.1",
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            },
            {
                "accession": "GCF_002902565.1",
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            },
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                "accession": "GCF_003035445.1",
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            },
            {
                "accession": "GCA_002902575.1",
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            },
            {
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                "num_clustered_genomes": 11,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.041,
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    "_genome_taxon": [
        "Staphylococcus",
        "capitis",
        "subsp.",
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    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}