{ "type": "genome", "identifier": "GCF_002902345.1", "organism": "Staphylococcus arlettae", "title": "Staphylococcus arlettae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Modernising Medical Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002902345.1", "bioproject": "PRJNA224116", "biosample": "SAMN06177163", "wgs_master": "PPQB00000000.1", "refseq_category": "na", "taxid": "29378", "species_taxid": "29378", "organism_name": "Staphylococcus arlettae", "infraspecific_name": "strain=NCTC 12413", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/27", "asm_name": "ASM290234v1", "asm_submitter": "Modernising Medical Microbiology", "gbrs_paired_asm": "GCA_002902345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/902/345/GCF_002902345.1_ASM290234v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2665344", "genome_size_ungapped": "2664285", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002902345.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "2630", "protein_coding_gene_count": "2551", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-27", "dateModified": "2018-01-27", "datePublished": "2018-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus arlettae" ], "sample_taxid": [ "29378" ], "sample_host_organism": [ "Poultry" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: London" ], "sample_host_location_id": [], "data_size": "0.747 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2665344", "Number of Sequences": "33", "Longest Sequences (bp)": "728162", "N50 (bp)": "331688", "Gap Ratio (%)": "0.039732", "GCcontent (%)": "33.5", "Number of CDSs": "2610", "Average Protein Length": "290.7", "Coding Ratio (%)": "85.4", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus arlettae", "strain": "strain=NCTC 12413", "accession": "GCA_002902345.1", "taxid": 29378, "species_taxid": 29378, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 877, "total_fragments": 877, 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"organism_name": "Staphylococcus durrellii", "strain": "strain=27_4_6_LY", "accession": "GCA_015594545.1", "taxid": 2781773, "species_taxid": 2781773, "relation_to_type": "type", "validated": true, "ani": 79.6796, "matched_fragments": 390, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus kloosii", "strain": "strain=NCTC 12415", "accession": "GCA_002902055.1", "taxid": 29384, "species_taxid": 29384, "relation_to_type": "type", "validated": true, "ani": 79.5802, "matched_fragments": 391, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus xylosus", "strain": "strain=NCTC 11043", "accession": "GCA_002901985.1", "taxid": 1288, "species_taxid": 1288, "relation_to_type": "type", "validated": true, "ani": 79.3338, "matched_fragments": 349, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus xylosus", "strain": 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79.6933, "matched_fragments": 389, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003019255.1", "gtdb_species": "s__Staphylococcus kloosii", "ani": 79.6886, "matched_fragments": 400, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "96.08", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_000010125.1", "gtdb_species": "s__Staphylococcus saprophyticus", "ani": 79.5409, "matched_fragments": 374, 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