{
    "type": "genome",
    "identifier": "GCF_002902505.1",
    "organism": "Staphylococcus condimenti",
    "title": "Staphylococcus condimenti",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Modernising Medical Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002902505.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05978004",
        "wgs_master": "PPQY00000000.1",
        "refseq_category": "na",
        "taxid": "70255",
        "species_taxid": "70255",
        "organism_name": "Staphylococcus condimenti",
        "infraspecific_name": "strain=DSM 11674",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/27",
        "asm_name": "ASM290250v1",
        "asm_submitter": "Modernising Medical Microbiology",
        "gbrs_paired_asm": "GCA_002902505.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/902/505/GCF_002902505.1_ASM290250v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2615688",
        "genome_size_ungapped": "2615647",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "211",
        "contig_count": "211",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002902505.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "2614",
        "protein_coding_gene_count": "2473",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-27",
    "dateModified": "2018-01-27",
    "datePublished": "2018-01-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus condimenti"
        ],
        "sample_taxid": [
            "70255"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.741 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2615688",
        "Number of Sequences": "211",
        "Longest Sequences (bp)": "90151",
        "N50 (bp)": "32221",
        "Gap Ratio (%)": "0.001567",
        "GCcontent (%)": "34.6",
        "Number of CDSs": "2487",
        "Average Protein Length": "293.2",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Staphylococcus condimenti",
                "strain": "strain=DSM 11674",
                "accession": "GCA_002902505.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 781,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus condimenti",
                "strain": "strain=NCTC13827",
                "accession": "GCA_900637235.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9991,
                "matched_fragments": 791,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus condimenti",
                "strain": "strain=DSM 11674",
                "accession": "GCA_001618885.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9978,
                "matched_fragments": 792,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus condimenti",
                "strain": "strain=FDAARGOS_1148",
                "accession": "GCA_016724565.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9978,
                "matched_fragments": 792,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus condimenti",
                "strain": "strain=DSM 11674",
                "accession": "GCA_001014685.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9932,
                "matched_fragments": 788,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=PartF-Saureus-RM8376",
                "accession": "GCA_022869625.1",
                "taxid": 1280,
                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3661,
                "matched_fragments": 201,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=NCTC 08532",
                "accession": "GCA_002902205.1",
                "taxid": 1280,
                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3349,
                "matched_fragments": 206,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001618885.1",
                "gtdb_species": "s__Staphylococcus condimenti",
                "ani": 99.9978,
                "matched_fragments": 792,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900458435.1",
                "gtdb_species": "s__Staphylococcus carnosus",
                "ani": 91.8937,
                "matched_fragments": 729,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_900186985.1",
                "gtdb_species": "s__Staphylococcus piscifermentans",
                "ani": 85.1243,
                "matched_fragments": 651,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003718735.1",
                "gtdb_species": "s__Staphylococcus debuckii",
                "ani": 84.8083,
                "matched_fragments": 675,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003043455.1",
                "gtdb_species": "s__Staphylococcus simulans_A",
                "ani": 81.1464,
                "matched_fragments": 451,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002902285.1",
                "gtdb_species": "s__Staphylococcus simulans",
                "ani": 81.0005,
                "matched_fragments": 489,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 77,
                "status": "-"
            },
            {
                "accession": "GCF_002994445.1",
                "gtdb_species": "s__Staphylococcus simulans_B",
                "ani": 80.8731,
                "matched_fragments": 465,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.89",
                "min_intra_species_ani": "96.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.041,
        "cell_length": -0.052,
        "doubling_h": -0.365,
        "growth_tmp": 33.0,
        "optimum_tmp": 34.151,
        "optimum_ph": 6.75,
        "genome_size": 2673414.0,
        "gc_content": 34.625,
        "coding_genes": 2441.0,
        "rRNA16S_genes": 5.667,
        "tRNA_genes": 58.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.029,
        "coccus_cell_shape": 0.97,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Staphylococcus",
        "condimenti"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}