{ "tc_result": [ { "organism_name": "Staphylococcus microti", "strain": "strain=DSM 22147", "accession": "GCA_002902635.1", "taxid": 569857, "species_taxid": 569857, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 731, "total_fragments": 740, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus microti", "strain": "strain=NCTC13832", "accession": "GCA_900458705.1", "taxid": 569857, "species_taxid": 569857, "relation_to_type": "type", "validated": true, "ani": 99.9834, "matched_fragments": 726, "total_fragments": 740, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus microti", "strain": "strain=DSM 22147", "accession": "GCA_000934465.1", "taxid": 569857, "species_taxid": 569857, "relation_to_type": "type", "validated": true, "ani": 99.9736, "matched_fragments": 709, "total_fragments": 740, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus rostri", "strain": "strain=DSM 21968", "accession": "GCA_002902145.1", "taxid": 522262, "species_taxid": 522262, "relation_to_type": "type", "validated": true, "ani": 84.6447, "matched_fragments": 572, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus muscae", "strain": "strain=NCTC13833", "accession": "GCA_900187005.1", "taxid": 1294, "species_taxid": 1294, "relation_to_type": "type", "validated": true, "ani": 81.7641, "matched_fragments": 499, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kurthia massiliensis", "strain": "strain=JC30", "accession": "GCA_000285555.1", "taxid": 1033739, "species_taxid": 1033739, "relation_to_type": "type", "validated": true, "ani": 77.432, "matched_fragments": 50, "total_fragments": 740, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000934465.1", "gtdb_species": "s__Staphylococcus microti", "ani": 99.9736, "matched_fragments": 709, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_002902145.1", "gtdb_species": "s__Staphylococcus rostri", "ani": 84.6525, "matched_fragments": 571, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003019275.1", "gtdb_species": "s__Staphylococcus muscae", "ani": 81.8264, "matched_fragments": 492, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013463155.1", "gtdb_species": "s__Staphylococcus sp013463155", "ani": 79.9808, "matched_fragments": 376, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900183575.1", "gtdb_species": "s__Staphylococcus cornubiensis", "ani": 79.3648, "matched_fragments": 293, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001792775.2", "gtdb_species": "s__Staphylococcus pseudintermedius", "ani": 79.3255, "matched_fragments": 261, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 431, "status": "-" }, { "accession": "GCF_900636325.1", "gtdb_species": "s__Staphylococcus delphini", "ani": 79.3197, "matched_fragments": 285, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_002902385.1", "gtdb_species": "s__Staphylococcus intermedius", "ani": 79.2101, "matched_fragments": 280, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.54", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_010365305.1", "gtdb_species": "s__Staphylococcus sp010365305", "ani": 79.0515, "matched_fragments": 304, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002101335.1", "gtdb_species": "s__Staphylococcus lutrae", "ani": 78.9194, "matched_fragments": 215, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900458895.2", "gtdb_species": "s__Staphylococcus schleiferi", "ani": 78.8076, "matched_fragments": 256, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0878, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_002901945.1", "gtdb_species": "s__Staphylococcus chromogenes", "ani": 78.6982, "matched_fragments": 225, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 130, "status": "-" }, { "accession": "GCF_004117835.1", "gtdb_species": "s__Macrococcus_B sp004117835", "ani": 78.4464, "matched_fragments": 99, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Macrococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002902575.1", "gtdb_species": "s__Staphylococcus croceilyticus", "ani": 78.1741, "matched_fragments": 168, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002902565.1", "gtdb_species": "s__Staphylococcus petrasii", "ani": 78.1126, "matched_fragments": 159, "total_fragments": 740, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.66", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.85", "num_clustered_genomes": 8, "status": "-" } ] }