{ "type": "genome", "identifier": "GCF_002902685.1", "organism": "Staphylococcus pettenkoferi", "title": "Staphylococcus pettenkoferi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Modernising Medical Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002902685.1", "bioproject": "PRJNA224116", "biosample": "SAMN05977985", "wgs_master": "PPRN00000000.1", "refseq_category": "na", "taxid": "170573", "species_taxid": "170573", "organism_name": "Staphylococcus pettenkoferi", "infraspecific_name": "strain=CCUG 51270", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/27", "asm_name": "ASM290268v1", "asm_submitter": "Modernising Medical Microbiology", "gbrs_paired_asm": "GCA_002902685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/902/685/GCF_002902685.1_ASM290268v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2455272", "genome_size_ungapped": "2455260", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "122", "contig_count": "122", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002902685.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "2400", "protein_coding_gene_count": "2272", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-27", "dateModified": "2018-01-27", "datePublished": "2018-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus pettenkoferi" ], "sample_taxid": [ "170573" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Gothenburg" ], "sample_host_location_id": [], "data_size": "0.703 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2455272", "Number of Sequences": "122", "Longest Sequences (bp)": "124278", "N50 (bp)": "62580", "Gap Ratio (%)": "0.000489", "GCcontent (%)": "38.9", "Number of CDSs": "2316", "Average Protein Length": "290.0", "Coding Ratio (%)": "82.1", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus pettenkoferi", "strain": "strain=CCUG 51270", "accession": "GCA_002902685.1", "taxid": 170573, "species_taxid": 170573, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus petrasii", "strain": "strain=CCUG 62727", "accession": "GCA_002902565.1", "taxid": 1276936, "species_taxid": 1276936, "relation_to_type": "type", "validated": true, "ani": 78.6085, "matched_fragments": 184, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus gallinarum", "strain": "strain=NCTC 12195", "accession": "GCA_003968815.1", "taxid": 1293, "species_taxid": 1293, "relation_to_type": "type", "validated": true, "ani": 78.5852, "matched_fragments": 165, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus durrellii", "strain": "strain=27_4_6_LY", "accession": "GCA_015594545.1", "taxid": 2781773, "species_taxid": 2781773, "relation_to_type": "type", "validated": true, "ani": 78.3613, "matched_fragments": 162, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus succinus subsp. succinus", "strain": "strain=DSM 14617", "accession": "GCA_001006765.1", "taxid": 224030, "species_taxid": 61015, "relation_to_type": "type", "validated": true, "ani": 78.2996, "matched_fragments": 177, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus caeli", "strain": "strain=82B", "accession": "GCA_900097965.1", "taxid": 2201815, "species_taxid": 2201815, "relation_to_type": "type", "validated": true, "ani": 78.0391, "matched_fragments": 181, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus intermedius", "strain": "strain=NCTC 11048", "accession": "GCA_002902385.1", "taxid": 1285, "species_taxid": 1285, "relation_to_type": "type", "validated": true, "ani": 78.0204, "matched_fragments": 133, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus 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"GCA_900458895.2", "taxid": 1295, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 77.582, "matched_fragments": 113, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002902685.1", "gtdb_species": "s__Staphylococcus pettenkoferi", "ani": 100.0, "matched_fragments": 768, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "96.01", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 21, "status": "conclusive" }, { "accession": "GCF_002902305.1", "gtdb_species": "s__Staphylococcus argensis", "ani": 92.3936, "matched_fragments": 719, "total_fragments": 770, "gtdb_taxonomy": 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