# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_16	LOCUS_00150	sequence002:7105..7236(+)	frameshift,internal_stop_codon	7234..7236(+),7405..7407(+)	7461	WP_001832700.1	IS200/IS605-like element ISSep3 family transposase	62.8	16.9	85.2
MGA_17	LOCUS_00160	sequence002:7237..7407(+)	frameshift,internal_stop_codon	7234..7236(+),7405..7407(+)	7461	WP_000093392.1	IS200/IS605 family transposase	100.0	34.8	87.5
MGA_37	LOCUS_00360	sequence004:1..794(+)	partial			WP_126564639.1	site-specific integrase	98.1	64.4	49.4
MGA_45	LOCUS_00440	sequence005:1256..1555(+)	partial			WP_001059647.1	ISL3 family transposase	94.9	21.2	41.5
MGA_62	LOCUS_00610	sequence006:11570..13336(+)	partial			WP_049387514.1	MSCRAMM-like protein SdrH	63.1	81.5	31.4
MGA_128	LOCUS_01250	sequence013:8416..8799(-)	internal_stop_codon	8800..8802(-)		WP_001089621.1	radical SAM/CxCxxxxC motif protein YfkAB	96.1	31.9	73.0
MGA_129	LOCUS_01260	sequence013:8800..9576(-)	internal_stop_codon	8800..8802(-)		WP_001830386.1	radical SAM/CxCxxxxC motif protein YfkAB	95.7	65.0	80.6
MGA_161	LOCUS_01580	sequence017:3160..3750(-)	partial			WP_003641231.1	phosphatase PAP2 family protein	61.7	60.5	31.6
MGA_211	LOCUS_02080	sequence022:10238..11059(-)	partial			WP_002485463.1	poly-gamma-glutamate hydrolase family protein	75.5	46.3	44.2
MGA_272	LOCUS_02660	sequence032:6796..8109(+)	partial			WP_010990014.1	autolysin Ami	70.0	37.4	37.7
MGA_313	LOCUS_03060	sequence035:18298..18717(+)	partial			WP_000932694.1	single-stranded DNA-binding protein	74.8	79.4	72.1
MGA_353	LOCUS_03430	sequence042:203..772(+)	partial			WP_011141158.1	sigma-70 family RNA polymerase sigma factor	83.6	71.2	36.4
MGA_356	LOCUS_03460	sequence042:3561..4568(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	42.4	81.1	27.4
MGA_376	LOCUS_03660	sequence042:23388..23810(+)	partial			WP_004254740.1	carboxymuconolactone decarboxylase family protein	70.7	82.0	47.0
MGA_404	LOCUS_03940	sequence045:1..3328(+)	partial			WP_013399748.1	Rib/alpha-like domain-containing protein	55.8	21.6	25.8
MGA_462	LOCUS_04510	sequence052:512..775(+)	frameshift		760,850	WP_001026122.1	MBL fold metallo-hydrolase	96.6	32.9	56.0
MGA_514	LOCUS_05010	sequence055:12077..12706(+)	frameshift,internal_stop_codon	12075..12077(+)	12065	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	97.6	44.2	69.6
MGA_553	LOCUS_05370	sequence060:8292..8429(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_569	LOCUS_05520	sequence063:4454..5719(-)	frameshift		5735	WP_010706747.1	DUF1116 domain-containing protein	98.1	41.4	67.8
MGA_570	LOCUS_05530	sequence063:5721..7481(-)	frameshift		5735	WP_010706747.1	DUF1116 domain-containing protein	99.1	57.9	49.8
MGA_577	LOCUS_05590	sequence066:334..609(+)	partial			WP_001829589.1	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	100.0	68.9	78.0
MGA_587	LOCUS_05690	sequence066:10502..10891(-)	frameshift,internal_stop_codon	10502..10504(-)	10414	WP_001829625.1	GrpB family protein	100.0	73.7	60.5
MGA_590	LOCUS_05720	sequence066:12158..12370(+)	frameshift		12137	WP_000985617.1	bacillithiol system redox-active protein YtxJ	98.6	65.1	82.6
MGA_673	LOCUS_06520	sequence075:14810..>18150(-)	partial			WP_001074534.1	glucosaminidase domain-containing protein	77.0	71.6	39.2
MGA_682	LOCUS_06610	sequence077:4440..4886(+)	partial			WP_000577672.1	helix-turn-helix transcriptional regulator	66.9	66.4	45.5
MGA_688	LOCUS_06670	sequence077:9597..9926(+)	frameshift		9875	WP_003244329.1	protease synthase/sporulation negative transcriptional regulator PaiB	80.7	42.5	53.4
MGA_718	LOCUS_06950	sequence081:5538..5816(-)	frameshift		5543	WP_000792342.1	BCCT family transporter	94.6	16.7	70.1
MGA_722	LOCUS_06990	sequence081:10335..10961(-)	frameshift,internal_stop_codon	11017..11019(-)	10932	WP_011948711.1	cytochrome P450	92.3	44.9	42.7
MGA_724	LOCUS_07010	sequence081:11153..11590(-)	frameshift,internal_stop_codon	11017..11019(-)	11182,10935	WP_011948711.1	cytochrome P450	93.1	32.2	40.7
MGA_725	LOCUS_07020	sequence081:11898..12605(+)	partial			WP_003438605.1	peroxiredoxin	93.2	31.7	42.2
MGA_727	LOCUS_07040	sequence081:15119..15694(-)	internal_stop_codon	15119..15121(-)		WP_001240990.1	MerR family transcriptional regulator	99.5	76.5	54.2
MGA_740	LOCUS_07160	sequence083:1535..2689(+)	frameshift,internal_stop_codon	2684..2686(+)	2680	WP_002382276.1	hydroxymethylglutaryl-CoA reductase, degradative	99.2	47.9	54.4
MGA_762	LOCUS_07370	sequence085:9048..9989(+)	partial			WP_003404247.1	DsbA family protein	58.1	81.9	29.7
MGA_819	LOCUS_07920	sequence090:2037..2474(-)	partial			WP_002456715.1	DUF4064 domain-containing protein	91.7	65.3	29.0
MGA_841	LOCUS_08130	sequence093:118..666(-)	partial			WP_000497497.1	AEC family transporter	100.0	59.7	37.4
MGA_854	LOCUS_08250	sequence096:357..899(+)	frameshift		198	WP_010974862.1	N-acyl homoserine lactonase AiiB	100.0	65.2	40.6
MGA_860	LOCUS_08300	sequence097:393..617(-)	partial			WP_011104332.1	MmcQ/YjbR family DNA-binding protein	98.6	62.4	49.3
MGA_985	LOCUS_09490	sequence115:76..732(+)	partial			WP_010989904.1	PRD domain-containing protein	99.5	45.6	33.9
MGA_1056	LOCUS_10170	sequence129:2955..5297(-)	partial			WP_010714140.1	DNA primase family protein	57.7	56.0	52.0
MGA_1060	LOCUS_10210	sequence129:6173..6796(-)	partial			WP_001002368.1	ORF6C domain-containing protein	44.9	40.7	34.4
MGA_1098	LOCUS_10540	sequence134:9999..11585(-)	partial			WP_010989348.1	phage tail protein	43.6	57.7	37.4
MGA_1100	LOCUS_10560	sequence134:12430..19458(-)	partial			WP_012047792.1	phage tail tape measure protein	38.5	81.5	26.2
MGA_1103	LOCUS_10590	sequence134:20079..20555(-)	partial			WP_010890689.1	Ig-like domain-containing protein	73.4	12.0	51.7
MGA_1126	LOCUS_10810	sequence135:21134..21301(+)	frameshift,internal_stop_codon	21299..21301(+)	21547	WP_000721551.1	osmoprotectant ABC transporter substrate-binding protein	100.0	17.6	52.7
MGA_1127	LOCUS_10820	sequence135:21362..21556(+)	frameshift,internal_stop_codon	21299..21301(+)	21547,21790	WP_001830497.1	osmoprotectant ABC transporter substrate-binding protein	100.0	20.1	57.8
MGA_1128	LOCUS_10830	sequence135:21664..21798(+)	frameshift		21553,21790	WP_002470137.1	osmoprotectant ABC transporter substrate-binding protein	95.5	13.4	76.2
MGA_1129	LOCUS_10840	sequence135:21773..21994(+)	frameshift		21553,21790	WP_003721931.1	osmoprotectant ABC transporter substrate-binding protein	94.5	22.4	62.3
MGA_1157	LOCUS_11090	sequence138:12145..12351(-)	partial			WP_001548522.1	TM2 domain-containing protein	94.1	69.6	76.6
MGA_1177	LOCUS_11280	sequence142:3961..4197(+)	frameshift		4170	WP_000477959.1	DUF3267 domain-containing protein	79.5	33.5	62.9
MGA_1178	LOCUS_11290	sequence142:4364..4528(+)	frameshift		4170	WP_001829837.1	DUF3267 domain-containing protein	87.0	25.3	66.0
MGA_1190	LOCUS_11410	sequence144:3762..4514(+)	partial			WP_000827010.1	hypothetical protein	56.8	73.5	45.3
MGA_1209	LOCUS_11590	sequence148:2225..>3479(-)	partial			WP_000432915.1	ferrous iron transport protein B	99.5	62.5	78.1
MGA_1258	LOCUS_12050	sequence159:1..1604(+)	partial			WP_002468914.1	YfhO family protein	99.2	61.2	54.2
MGA_1265	LOCUS_12120	sequence159:7939..8133(+)	internal_stop_codon	7900..7902(+),8131..8133(+)		WP_001832263.1	NtaA/DmoA family FMN-dependent monooxygenase	100.0	14.7	60.9
MGA_1266	LOCUS_12130	sequence159:8215..8409(+)	frameshift,internal_stop_codon	8131..8133(+)	8394,8604	WP_001832263.1	NtaA/DmoA family FMN-dependent monooxygenase	93.8	13.8	55.0
MGA_1307	LOCUS_12460	sequence170:1..634(+)	partial			WP_011704992.1	inverse autotransporter beta-barrel domain-containing protein	71.4	17.2	35.4
MGA_1309	LOCUS_12470	sequence171:85..>693(-)	partial			WP_001010762.1	cytochrome aa3 quinol oxidase subunit I	100.0	30.5	81.2
MGA_1334	LOCUS_12680	sequence181:2180..2767(-)	frameshift		2795	WP_000769415.1	D-alanyl-lipoteichoic acid biosynthesis protein DltD	96.9	48.6	61.6
MGA_1335	LOCUS_12690	sequence181:2787..3317(-)	frameshift		2804	WP_001831904.1	D-alanyl-lipoteichoic acid biosynthesis protein DltD	97.2	41.3	71.3
MGA_1363	LOCUS_12910	sequence190:2287..2541(-)	partial			WP_001832177.1	membrane protein	91.7	21.7	45.5
MGA_1379	LOCUS_13070	sequence190:19513..20097(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	68.0	74.9	33.3
MGA_1418	LOCUS_13410	sequence199:1974..2360(+)	frameshift		2357	WP_011100908.1	ABC transporter permease	95.3	22.9	30.9
MGA_1419	LOCUS_13420	sequence199:2381..3562(+)	frameshift,internal_stop_codon	2358..2360(+)	2366	WP_002289289.1	ABC transporter permease	100.0	73.7	28.1
MGA_1450	LOCUS_13680	sequence205:2768..3325(-)	partial			WP_000701483.1	DNA-directed RNA polymerase subunit delta	71.9	75.6	78.2
MGA_1465	LOCUS_13800	sequence210:418..840(+)	partial			WP_002855690.1	alpha/beta hydrolase	84.3	38.3	35.6
MGA_1480	LOCUS_13870	sequence219:333..983(+)	frameshift		917	WP_001793242.1	NAD-dependent epimerase/dehydratase family protein	94.0	62.3	51.2
MGA_1481	LOCUS_13880	sequence219:1001..1267(+)	frameshift		917	WP_001793242.1	NAD-dependent epimerase/dehydratase family protein	92.0	24.8	42.0
MGA_1482	LOCUS_13890	sequence219:1284..3800(+)	partial			WP_010905630.1	CDP-glycerol glycerophosphotransferase family protein	73.3	76.2	35.5
MGA_1497	LOCUS_14020	sequence221:11669..11944(-)	frameshift		11743	WP_000072995.1	GNAT family N-acetyltransferase	90.1	64.4	41.7
MGA_1512	LOCUS_14170	sequence222:1655..2026(+)	partial			WP_011087977.1	Hsp20/alpha crystallin family protein	75.6	55.8	33.3
MGA_1577	LOCUS_14690	sequence240:1623..1820(-)	partial			WP_001044441.1	M23 family metallopeptidase	86.2	19.7	55.4
MGA_1591	LOCUS_14820	sequence243:155..1957(+)	partial			WP_011015494.1	metallophosphoesterase family protein	73.0	65.9	26.0
MGA_1642	LOCUS_15280	sequence252:1..609(+)	partial			WP_001010762.1	cytochrome aa3 quinol oxidase subunit I	100.0	30.5	87.6
MGA_1648	LOCUS_15320	sequence254:6..1262(-)	partial			WP_002386255.1	DUF1958 domain-containing protein	87.1	74.0	38.3
MGA_1677	LOCUS_15540	sequence265:326..484(-)	partial			WP_001830756.1	hypothetical protein	65.4	73.9	76.5
MGA_1679	LOCUS_15560	sequence265:1158..1316(+)	partial			WP_000025835.1	hypothetical protein	57.7	46.2	76.7
MGA_1684	LOCUS_15600	sequence265:3416..3835(-)	frameshift		3882,3426	WP_012775607.1	nucleotidyltransferase domain-containing protein	97.1	46.7	52.6
MGA_1685	LOCUS_15610	sequence265:3877..4095(-)	frameshift		3882	WP_000228166.1	nucleotidyltransferase domain-containing protein	94.4	23.2	52.9
MGA_1687	LOCUS_15630	sequence266:157..837(-)	partial			WP_203873878.1	alpha/beta hydrolase fold domain-containing protein	68.1	40.9	29.8
MGA_1691	LOCUS_15670	sequence268:526..894(+)	frameshift		493	WP_000436823.1	DUF805 domain-containing protein	96.7	61.7	32.0
MGA_1730	LOCUS_15950	sequence281:1716..2159(-)	partial			WP_003246419.1	helix-turn-helix domain-containing GNAT family N-acetyltransferase	89.8	43.3	37.1
MGA_1732	LOCUS_15970	sequence281:3440..>3979(-)	partial			WP_011100868.1	WYL domain-containing protein	98.3	56.5	37.5
MGA_1747	LOCUS_16100	sequence290:123..551(-)	frameshift		564	WP_011085070.1	RraA family protein	98.6	61.8	40.7
MGA_1762	LOCUS_16190	sequence295:2578..2841(-)	frameshift		2990	WP_001830914.1	LysE family translocator	96.6	40.5	43.5
MGA_1792	LOCUS_16480	sequence297:134..550(+)	partial			WP_075141044.1	replication initiator protein A	100.0	44.2	83.3
MGA_1798	LOCUS_16500	sequence301:1..869(+)	partial			WP_001017867.1	rhomboid family intramembrane serine protease	100.0	59.1	62.8
MGA_1830	LOCUS_16760	sequence309:597..872(+)	frameshift		476,575	WP_167797511.1	transposase	79.1	33.6	79.2
MGA_1843	LOCUS_16850	sequence314:479..835(+)	frameshift		473	WP_002494449.1	IS1182-like element ISSep1 family transposase	83.9	17.7	84.8
MGA_1851	LOCUS_16920	sequence316:2945..3322(-)	partial			WP_011392911.1	sugar phosphate isomerase/epimerase	79.2	36.2	36.0
MGA_1869	LOCUS_17100	sequence318:16439..17296(-)	partial			WP_000170400.1	staphyloferrin A export MFS transporter	97.9	70.5	58.6
MGA_1927	LOCUS_17620	sequence327:1..661(+)	frameshift,internal_stop_codon	659..661(+)	664	WP_002485803.1	SMC family ATPase	95.0	20.6	29.3
MGA_1928	LOCUS_17630	sequence327:714..1895(+)	frameshift,internal_stop_codon	659..661(+)	664	WP_002485803.1	SMC family ATPase	98.5	38.4	55.0
MGA_1996	LOCUS_18250	sequence334:194..556(+)	frameshift		547	WP_011117524.1	P-loop NTPase fold protein	98.3	19.3	67.8
MGA_2001	LOCUS_18270	sequence337:139..1023(-)	partial			WP_009891031.1	CDP-glycerol glycerophosphotransferase family protein	85.7	67.0	29.1
MGA_2012	LOCUS_18340	sequence341:5864..6229(+)	frameshift		5921,6089,6113	WP_000643657.1	multidrug resistance efflux transporter family protein	45.5	17.6	45.5
MGA_2095	LOCUS_19090	sequence351:14384..14926(+)	frameshift		14968,14899,14325,14998	WP_001832893.1	membrane protein insertase YidC	96.7	62.6	62.6
MGA_2251	LOCUS_20620	sequence360:5478..6197(+)	partial			WP_011082549.1	IS1182-like element ISSep1 family transposase	97.1	42.0	83.2
MGA_2265	LOCUS_20760	sequence361:9291..10061(-)	frameshift		10063	WP_000819684.1	spermidine/putrescine ABC transporter substrate-binding protein	99.6	71.4	69.4
MGA_2266	LOCUS_20770	sequence361:10046..10357(-)	frameshift		10063	WP_000819684.1	spermidine/putrescine ABC transporter substrate-binding protein	95.1	27.5	78.6
MGA_2267	LOCUS_20780	sequence361:10509..11159(-)	frameshift,internal_stop_codon	10412..10414(-)	11098,10549	WP_103388157.1	ABC transporter permease	87.5	71.3	73.5
MGA_2269	LOCUS_20800	sequence361:11960..12613(-)	frameshift		12642	WP_001831686.1	ABC transporter ATP-binding protein	99.1	59.1	80.9
MGA_2270	LOCUS_20810	sequence361:12613..13059(-)	frameshift		12642	WP_001831686.1	ABC transporter ATP-binding protein	93.9	38.2	69.8
MGA_2356	LOCUS_21670	sequence365:11567..12457(+)	partial			WP_002470268.1	FtsQ-type POTRA domain-containing protein	99.7	63.5	57.3
MGA_2380	LOCUS_21910	sequence366:524..1246(+)	partial			WP_000070831.1	DUF4887 domain-containing protein	21.2	25.8	53.7
MGA_2405	LOCUS_22140	sequence370:108..1049(+)	partial			WP_010886457.1	mechanosensitive ion channel	98.7	56.0	24.9
MGA_2408	LOCUS_22170	sequence370:3832..5784(-)	partial			WP_011203125.1	right-handed parallel beta-helix repeat-containing protein	94.8	45.1	35.4
MGA_2422	LOCUS_22310	sequence370:20650..21873(+)	partial			WP_124797038.1	putative glycoside hydrolase	84.5	72.6	36.9
MGA_2452	LOCUS_22600	sequence371:4481..5551(+)	internal_stop_codon	5549..5551(+)		WP_013096863.1	p-aminobenzoyl-glutamate transporter	97.5	68.3	39.7
MGA_2453	LOCUS_22610	sequence371:5561..5995(+)	internal_stop_codon	5549..5551(+)		WP_010957212.1	AbgT family transporter	95.8	26.7	55.8
MGA_2489	LOCUS_22950	sequence373:325..819(-)	frameshift,internal_stop_codon	1096..1098(-)	1026,866	WP_010964640.1	SDR family oxidoreductase	98.8	56.8	68.5
MGA_2490	LOCUS_22960	sequence373:864..1064(-)	frameshift,internal_stop_codon	1096..1098(-)	866,1035	WP_003245605.1	SDR family oxidoreductase	100.0	23.7	45.5
MGA_2515	LOCUS_23210	sequence374:11642..12004(+)	frameshift		11989	WP_001831256.1	50S ribosomal protein L11 methyltransferase	91.7	35.3	50.9
MGA_2516	LOCUS_23220	sequence374:11970..12575(+)	frameshift		11989	WP_001831256.1	50S ribosomal protein L11 methyltransferase	96.5	62.2	82.0
MGA_2519	LOCUS_23250	sequence374:15136..15312(+)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	95.3
MGA_2542	LOCUS_23480	sequence376:9253..9615(-)	partial			WP_001830560.1	MepB family protein	97.5	70.9	49.6
MGA_2632	LOCUS_24340	sequence389:5916..6056(+)	frameshift,internal_stop_codon	6111..6113(+)	6050	WP_005816008.1	DUF2200 domain-containing protein	100.0	39.7	56.5
MGA_2640	LOCUS_24390	sequence391:657..1340(-)	partial			WP_010905682.1	helix-turn-helix domain-containing protein	33.9	42.8	48.1
MGA_2653	LOCUS_24520	sequence391:6491..7210(+)	partial			WP_000132051.1	helix-turn-helix domain-containing protein	39.3	38.7	58.5
MGA_2674	LOCUS_24730	sequence391:13486..14235(+)	partial			WP_010965201.1	HNH endonuclease signature motif containing protein	27.3	66.0	48.5
MGA_2733	LOCUS_25300	sequence398:1298..2731(-)	partial			WP_000883425.1	YhgE/Pip domain-containing protein	55.6	34.3	29.9
MGA_2747	LOCUS_25440	sequence399:2100..2471(+)	frameshift		2441	WP_000697220.1	competence type IV pilus ATPase ComGA	91.9	34.9	59.3
MGA_2748	LOCUS_25450	sequence399:2471..3073(+)	frameshift		2432	WP_001831109.1	competence type IV pilus ATPase ComGA	100.0	61.7	66.0
MGA_2754	LOCUS_25500	sequence400:4703..5458(-)	partial			WP_011861991.1	ATP-binding cassette domain-containing protein	91.2	69.8	49.8
MGA_2788	LOCUS_25800	sequence404:10452..11018(-)	partial			WP_002485473.1	zinc ribbon domain-containing protein	78.7	58.2	31.8
MGA_2789	LOCUS_25810	sequence405:1..2099(+)	partial			WP_014855724.1	N-6 DNA methylase	44.6	29.1	25.1
MGA_2820	LOCUS_26120	sequence407:2705..2932(+)	frameshift,internal_stop_codon	2642..2644(+),2585..2587(+),2651..2653(+)	2869	WP_000894660.1	formate C-acetyltransferase	73.3	7.3	76.4
MGA_2837	LOCUS_26270	sequence409:4625..6649(+)	partial			WP_003244874.1	peptidoglycan endopeptidase LytF	41.1	68.9	32.8