{ "type": "genome", "identifier": "GCF_002906155.1", "organism": "Pseudomonas laurylsulfativorans", "title": "Pseudomonas laurylsulfativorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Biochemistry and Biophysics Polish Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002906155.1", "bioproject": "PRJNA224116", "biosample": "SAMN06289919", "wgs_master": "MUJK00000000.1", "refseq_category": "reference genome", "taxid": "1943631", "species_taxid": "1943631", "organism_name": "Pseudomonas laurylsulfativorans", "infraspecific_name": "strain=AP3_22", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/29", "asm_name": "ASM290615v1", "asm_submitter": "Institute of Biochemistry and Biophysics Polish Academy of Sciences", "gbrs_paired_asm": "GCA_002906155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/906/155/GCF_002906155.1_ASM290615v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6686052", "genome_size_ungapped": "6686052", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002906155.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6061", "protein_coding_gene_count": "5850", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-29", "dateModified": "2018-01-29", "datePublished": "2018-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas laurylsulfativorans" ], "sample_taxid": [ "1943631" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Poland: Jaworzno" ], "sample_host_location_id": [], "data_size": "1.874 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6686052", "Number of Sequences": "30", "Longest Sequences (bp)": "1428571", "N50 (bp)": "593348", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "5997", "Average Protein Length": "323.7", "Coding Ratio (%)": "87.1", "Number of rRNAs": "4", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas laurylsulfativorans", "strain": "strain=AP3_22", "accession": "GCA_002906155.1", "taxid": 1943631, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 86.5963, "matched_fragments": 1418, "total_fragments": 2215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kribbensis", "strain": "strain=46-2", "accession": "GCA_003352185.1", "taxid": 1628086, "species_taxid": 1628086, "relation_to_type": "type", "validated": true, "ani": 86.2729, "matched_fragments": 1430, "total_fragments": 2215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 86.2462, "matched_fragments": 1416, "total_fragments": 2215, "ani_threshold": 95, "status": "below_threshold" }, { 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