# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_20	LOCUS_00200	sequence01:21307..21924(+)	partial			WP_002287436.1	sigma-70 family RNA polymerase sigma factor	58.5	65.6	32.5
MGA_94	LOCUS_00940	sequence01:95196..95912(+)	partial			WP_003641072.1	CdaR family protein	100.0	73.5	45.2
MGA_96	LOCUS_00960	sequence01:97758..98327(+)	partial			WP_003642331.1	L,D-transpeptidase	80.4	72.7	55.9
MGA_124	LOCUS_01240	sequence01:127256..129088(+)	partial			WP_003722638.1	NlpC/P60 family protein	37.5	58.1	32.2
MGA_129	LOCUS_01290	sequence01:132820..133923(+)	frameshift		132757	WP_003644720.1	dihydroorotase	99.5	84.9	58.6
MGA_138	LOCUS_01380	sequence01:140951..141370(-)	partial			WP_003702512.1	3-hydroxyacyl-CoA dehydrogenase	100.0	47.8	50.7
MGA_168	LOCUS_01680	sequence01:165999..166610(-)	frameshift		166594	WP_011476151.1	replication-associated recombination protein A	97.0	46.8	69.2
MGA_169	LOCUS_01690	sequence01:166589..167278(-)	frameshift		166600	WP_011109512.1	replication-associated recombination protein A	99.6	53.9	73.4
MGA_205	LOCUS_02050	sequence01:207498..207983(-)	partial			WP_003641529.1	YslB family protein	93.8	67.0	36.8
MGA_209	LOCUS_02090	sequence01:210691..211104(+)	partial			WP_003641537.1	DUF948 domain-containing protein	65.7	74.6	42.7
MGA_228	LOCUS_02280	sequence01:226375..226914(-)	internal_stop_codon	226921..226923(-)		WP_011475894.1	site-specific integrase	94.4	44.8	62.7
MGA_229	LOCUS_02290	sequence01:226921..227307(-)	frameshift,internal_stop_codon	226921..226923(-)	227287	WP_011475894.1	site-specific integrase	97.7	33.5	53.6
MGA_236	LOCUS_02360	sequence01:230442..231242(-)	partial			WP_115413024.1	Ltp family lipoprotein	37.2	28.8	49.5
MGA_260	LOCUS_02600	sequence01:254837..257101(+)	partial			WP_011101414.1	DNA translocase FtsK	62.2	46.9	67.4
MGA_282	LOCUS_02820	sequence01:275842..277290(+)	partial			WP_000582678.1	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	84.2	52.8	33.5
MGA_366	LOCUS_03660	sequence01:356736..357062(+)	frameshift		356710	WP_003640522.1	MarR family transcriptional regulator	86.1	66.4	54.8
MGA_368	LOCUS_03680	sequence01:358106..359113(+)	partial			WP_011101297.1	tyrosine-type recombinase/integrase	53.7	82.6	25.4
MGA_392	LOCUS_03920	sequence01:384159..384941(-)	partial			WP_011101580.1	LysM domain-containing protein	48.5	61.0	29.7
MGA_494	LOCUS_04940	sequence01:489065..489715(+)	partial			WP_003238209.1	transcriptional repressor LexA	55.6	59.0	39.0
MGA_514	LOCUS_05130	sequence01:507967..508542(-)	partial			WP_011101661.1	DNA internalization-related competence protein ComEC/Rec2	94.8	23.6	43.1
MGA_517	LOCUS_05160	sequence01:510067..510318(-)	partial			WP_011101133.1	phage holin	85.5	59.7	42.3
MGA_538	LOCUS_05360	sequence02:1332..1814(-)	frameshift		1854	WP_000869224.1	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	93.1	55.2	39.6
MGA_539	LOCUS_05370	sequence02:1771..2130(-)	frameshift		1854	WP_012255997.1	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	85.7	37.8	33.0
MGA_540	LOCUS_05380	sequence02:2120..2698(-)	internal_stop_codon	2852..2854(-)		WP_010989780.1	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	91.7	31.0	48.3
MGA_541	LOCUS_05390	sequence02:2852..3784(-)	internal_stop_codon	2852..2854(-)		WP_010989780.1	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	94.8	52.4	39.5
MGA_542	LOCUS_05400	sequence02:3777..4925(-)	partial			WP_004398674.1	isochorismate synthase MenF	66.5	53.3	36.9
MGA_558	LOCUS_05560	sequence03:3987..4145(+)	internal_stop_codon	3957..3959(+)		WP_010625611.1	hypothetical protein	100.0	74.3	94.2
MGA_579	LOCUS_05680	sequence10:234..839(+)	frameshift		836	WP_003640791.1	ABC transporter substrate-binding protein/permease	97.0	40.1	50.0
MGA_580	LOCUS_05690	sequence10:1010..1702(+)	frameshift		836	WP_003640791.1	ABC transporter substrate-binding protein/permease	99.1	47.3	62.9
MGA_587	LOCUS_05760	sequence10:5426..6028(-)	frameshift		6066	WP_002362058.1	amino acid permease	99.0	45.0	57.3
MGA_588	LOCUS_05770	sequence10:6043..6744(-)	frameshift		6072	WP_002362058.1	amino acid permease	97.0	51.1	55.8
MGA_604	LOCUS_05930	sequence10:24000..24383(-)	frameshift		24011	WP_003641317.1	LysR family transcriptional regulator	90.6	38.3	38.3
MGA_606	LOCUS_05950	sequence10:26095..26553(+)	frameshift		26550	WP_011476274.1	LysR family transcriptional regulator	99.3	51.9	37.3
MGA_616	LOCUS_06050	sequence10:36934..37731(+)	partial			WP_003703661.1	LysM peptidoglycan-binding domain-containing protein	29.4	41.3	55.1
MGA_618	LOCUS_06070	sequence10:38739..39221(+)	frameshift		39209	WP_002485917.1	accessory Sec system translocase SecA2	89.4	18.0	50.3
MGA_619	LOCUS_06080	sequence10:39271..41103(+)	frameshift		39176	WP_011836745.1	accessory Sec system translocase SecA2	100.0	77.8	41.2
MGA_621	LOCUS_06100	sequence10:42378..42974(+)	partial			WP_002485487.1	accessory Sec system protein Asp1	89.9	34.2	26.7
MGA_627	LOCUS_06160	sequence10:48716..50257(+)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	95.7	19.9	24.5
MGA_634	LOCUS_06230	sequence10:58053..58433(+)	partial			WP_009924328.1	hypothetical protein	73.0	76.1	31.5
MGA_641	LOCUS_06300	sequence10:63676..64281(+)	partial			WP_002455926.1	helix-turn-helix transcriptional regulator	50.7	61.4	36.7
MGA_655	LOCUS_06440	sequence10:77304..81386(-)	partial			WP_011109529.1	BspA family leucine-rich repeat surface protein	28.8	34.7	29.3
MGA_659	LOCUS_06480	sequence10:87140..87736(-)	partial			WP_011101964.1	DNA/RNA non-specific endonuclease	88.4	56.4	35.8
MGA_683	LOCUS_06720	sequence10:112695..113654(+)	partial			WP_002936347.1	glycosyltransferase family 2 protein	69.3	66.9	33.0
MGA_713	LOCUS_07020	sequence10:142926..144287(-)	partial			WP_000214765.1	AAA family ATPase	58.9	28.2	44.2
MGA_719	LOCUS_07080	sequence10:149196..151904(+)	partial			WP_011100953.1	MMPL family transporter	80.0	55.8	39.0
MGA_728	LOCUS_07170	sequence10:158394..161915(+)	partial			WP_011101863.1	SH3 domain-containing protein	48.9	70.2	36.2
MGA_735	LOCUS_07240	sequence10:167641..168186(+)	frameshift		168159	WP_117530778.1	cytosine deaminase	96.1	42.3	53.4
MGA_736	LOCUS_07250	sequence10:168195..168857(+)	frameshift		168159	WP_117530778.1	cytosine deaminase	97.3	52.1	58.9
MGA_737	LOCUS_07260	sequence10:169063..170088(+)	frameshift		170074,169003	WP_003641313.1	class II fumarate hydratase	98.5	73.3	61.1
MGA_738	LOCUS_07270	sequence10:170099..170278(+)	frameshift		170073	WP_011476283.1	class II fumarate hydratase	93.2	12.0	76.4
MGA_754	LOCUS_07430	sequence10:183170..183922(+)	partial			WP_004255227.1	biotin--[acetyl-CoA-carboxylase] ligase	90.0	72.8	29.8
MGA_764	LOCUS_07530	sequence10:189293..189979(+)	frameshift,internal_stop_codon	189978..189980(+)	189200	WP_003642847.1	BCCT family transporter	100.0	41.1	64.5
MGA_765	LOCUS_07540	sequence10:189992..190642(+)	internal_stop_codon	189977..189979(+)		WP_003642847.1	BCCT family transporter	80.6	31.4	67.2
MGA_782	LOCUS_07710	sequence10:206628..206855(-)	internal_stop_codon	206628..206630(-)		WP_003643535.1	hypothetical protein	100.0	61.0	50.7
MGA_793	LOCUS_07820	sequence10:216892..217509(+)	frameshift		217461	WP_002285885.1	ABC transporter ATP-binding protein	93.2	32.4	49.2
MGA_794	LOCUS_07830	sequence10:217659..218657(+)	frameshift		217464	WP_002358756.1	multidrug ABC transporter ATP-binding protein/permease ErfD	99.4	56.0	65.2
MGA_804	LOCUS_07930	sequence10:227357..228547(-)	internal_stop_codon	228614..228616(-)		WP_002438244.1	amino acid permease	99.5	70.3	59.9
MGA_805	LOCUS_07940	sequence10:228614..228973(-)	internal_stop_codon	228614..228616(-)		WP_002438244.1	amino acid permease	96.6	20.6	62.6
MGA_823	LOCUS_08120	sequence10:242163..244457(+)	partial			WP_012775222.1	FtsX-like permease family protein	66.1	47.2	22.1
MGA_827	LOCUS_08160	sequence10:246795..247178(-)	internal_stop_codon	247275..247277(-)		WP_011101195.1	cation:proton antiporter	99.2	20.4	46.0
MGA_828	LOCUS_08170	sequence10:247275..248657(-)	internal_stop_codon	247275..247277(-)		WP_011101195.1	cation:proton antiporter	99.6	73.9	52.0
MGA_833	LOCUS_08220	sequence10:252574..253695(-)	internal_stop_codon	253801..253803(-)		WP_002295940.1	amino acid permease	99.7	76.8	70.4
MGA_834	LOCUS_08230	sequence10:253801..254049(-)	internal_stop_codon	253801..253803(-)		WP_002295940.1	amino acid permease	79.3	13.7	72.3
MGA_842	LOCUS_08310	sequence10:264663..264854(-)	frameshift		264843	WP_003721879.1	GTPase HflX	95.2	14.4	36.7
MGA_864	LOCUS_08530	sequence10:285033..289367(+)	partial			WP_011254515.1	YSIRK-type signal peptide-containing protein	49.2	78.1	26.0
MGA_866	LOCUS_08550	sequence10:290360..290740(+)	frameshift		290686	WP_010906015.1	5-(carboxyamino)imidazole ribonucleotide mutase	86.5	67.7	67.0
MGA_872	LOCUS_08610	sequence10:293626..295236(+)	frameshift,internal_stop_codon	295162..295164(+)	295158	WP_003645864.1	phosphoribosylformylglycinamidine synthase subunit PurL	94.4	68.9	63.5
MGA_873	LOCUS_08620	sequence10:295221..295862(+)	frameshift		295170	WP_011674596.1	phosphoribosylformylglycinamidine synthase subunit PurL	98.6	28.3	50.5
MGA_944	LOCUS_09330	sequence10:360510..360809(+)	frameshift		360806	WP_011101593.1	ArgE/DapE family deacylase	93.9	24.4	46.8
MGA_945	LOCUS_09340	sequence10:360815..361738(+)	frameshift		360806	WP_003701251.1	ArgE/DapE family deacylase	99.0	72.0	38.8
MGA_967	LOCUS_09560	sequence11:54..>1702(-)	partial			WP_041670058.1	RecQ family ATP-dependent DNA helicase	66.6	20.6	28.6
MGA_968	LOCUS_09570	sequence12:469..1494(+)	partial			WP_041272295.1	IS4-like element ISDha5 family transposase	98.5	72.9	33.8
MGA_972	LOCUS_09600	sequence14:919..>1476(-)	partial			WP_003578518.1	glycosyltransferase family 8 protein	100.0	58.8	40.1
MGA_984	LOCUS_09700	sequence16:7240..7599(-)	internal_stop_codon	7645..7647(-)		WP_011475501.1	biotin transporter BioY	99.2	65.7	34.5
MGA_994	LOCUS_09800	sequence16:14602..18360(-)	partial			WP_010989982.1	lmo2396 family class 1 internalin	38.9	50.2	33.1
MGA_995	LOCUS_09810	sequence16:18409..19371(-)	partial			WP_011101160.1	bacterial Ig-like domain-containing protein	81.9	11.8	24.1
MGA_1004	LOCUS_09900	sequence16:32565..37799(+)	partial			WP_011101486.1	KxYKxGKxW signal peptide domain-containing protein	58.3	44.7	34.1
MGA_1006	LOCUS_09920	sequence16:38805..39422(-)	partial			WP_000456640.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	99.0	49.6	51.7
MGA_1007	LOCUS_09930	sequence16:39665..40384(-)	internal_stop_codon	40388..40390(-),40658..40660(-)		WP_010892188.1	arginine/agmatine antiporter AaxC	92.9	47.6	35.5
MGA_1009	LOCUS_09950	sequence16:40658..41023(-)	internal_stop_codon	40388..40390(-),40658..40660(-)		WP_010892188.1	arginine/agmatine antiporter AaxC	100.0	24.9	35.5
MGA_1010	LOCUS_09960	sequence16:41192..41476(-)	partial			WP_003231284.1	Zn(II)-responsive metalloregulatory transcriptional repressor CzrA	83.0	72.9	43.6
MGA_1015	LOCUS_10010	sequence16:45756..45887(-)	frameshift		45913	WP_002296337.1	carboxymuconolactone decarboxylase family protein	100.0	37.7	60.5
MGA_1016	LOCUS_10020	sequence16:45896..46078(-)	frameshift		45901	WP_011202637.1	carboxymuconolactone decarboxylase family protein	86.7	19.1	73.1
MGA_1029	LOCUS_10150	sequence16:56096..56995(-)	partial			WP_011101804.1	MucBP domain-containing protein	15.7	5.1	51.1
MGA_1036	LOCUS_10220	sequence16:62018..62314(+)	partial			WP_015379645.1	metalloregulator ArsR/SmtB family transcription factor	67.3	66.7	56.1
MGA_1078	LOCUS_10640	sequence16:104644..104946(+)	frameshift		104856	WP_003643926.1	DMT family transporter	71.0	20.8	60.6
MGA_1079	LOCUS_10650	sequence16:104885..105592(+)	frameshift		104856	WP_003643926.1	DMT family transporter	95.7	65.7	50.7
MGA_1104	LOCUS_10900	sequence17:9442..10011(-)	internal_stop_codon	10048..10050(-)		WP_002299522.1	serine hydrolase	94.2	42.8	36.0
MGA_1105	LOCUS_10910	sequence17:10048..10761(-)	internal_stop_codon	10048..10050(-)		WP_011476403.1	D-alanyl-D-alanine carboxypeptidase family protein	90.3	53.9	37.9
MGA_1190	LOCUS_11740	sequence17:86434..88098(+)	partial			WP_011101832.1	MMPL family transporter	89.9	56.2	25.7
MGA_1207	LOCUS_11910	sequence18:12626..13051(+)	partial			WP_003642631.1	Hsp20/alpha crystallin family protein	66.0	65.5	53.8
MGA_1229	LOCUS_12130	sequence18:39295..39999(+)	frameshift		39963	WP_003644494.1	MFS transporter	93.2	45.0	52.3
MGA_1230	LOCUS_12140	sequence18:39926..40486(+)	frameshift,internal_stop_codon	40484..40486(+)	40489,39963	WP_003644494.1	MFS transporter	89.8	34.5	47.3
MGA_1242	LOCUS_12260	sequence18:49211..50005(+)	internal_stop_codon	49139..49141(+)		WP_011101815.1	2-dehydropantoate 2-reductase	98.9	79.6	70.9
MGA_1254	LOCUS_12380	sequence18:60644..61144(+)	partial			WP_003642652.1	hypothetical protein	71.7	77.9	35.5
MGA_1259	LOCUS_12430	sequence18:64407..64745(-)	frameshift		64752	WP_003645914.1	hypothetical protein	97.3	38.5	45.0
MGA_1260	LOCUS_12440	sequence18:64747..65253(-)	frameshift		64752	WP_003645914.1	hypothetical protein	88.1	54.1	55.6
MGA_1283	LOCUS_12660	sequence19:8329..8700(-)	partial			WP_010905958.1	DUF1064 domain-containing protein	69.9	67.7	46.5
MGA_1289	LOCUS_12720	sequence19:11781..12596(-)	partial			WP_011860997.1	phage recombination protein Bet	58.7	53.3	55.6
MGA_1298	LOCUS_12810	sequence19:14681..14932(-)	partial			WP_010622329.1	Rha family transcriptional regulator	98.8	35.0	58.8
MGA_1300	LOCUS_12830	sequence19:15325..15975(+)	partial			WP_003894124.1	transcriptional repressor LexA	54.6	48.6	44.2
MGA_1301	LOCUS_12840	sequence19:16100..16777(+)	partial			WP_002387265.1	SHOCT domain-containing protein	64.4	70.8	28.4
MGA_1303	LOCUS_12860	sequence19:18053..19591(-)	partial			WP_011101661.1	DNA internalization-related competence protein ComEC/Rec2	93.0	63.2	32.4
MGA_1305	LOCUS_12880	sequence19:20293..20970(-)	partial			WP_011101662.1	helix-hairpin-helix domain-containing protein	79.1	71.8	46.1
MGA_1313	LOCUS_12960	sequence19:27019..27873(-)	partial			WP_011101670.1	lactate dehydrogenase	76.1	70.3	33.5
MGA_1333	LOCUS_13160	sequence19:46337..46618(-)	partial			WP_002355902.1	YggT family protein	69.9	78.8	53.7
MGA_1337	LOCUS_13200	sequence19:49759..50562(-)	partial			WP_002286633.1	cell division protein FtsQ/DivIB	98.9	66.0	26.3
MGA_1349	LOCUS_13320	sequence19:61756..62124(+)	frameshift		62106,62118	WP_003569480.1	copper homeostasis protein CutC	94.3	56.4	44.5
MGA_1380	LOCUS_13620	sequence20:21265..22110(+)	partial			WP_010989527.1	DUF4097 domain-containing protein	52.3	39.1	29.5
MGA_1384	LOCUS_13660	sequence20:25658..26161(-)	partial			WP_011101020.1	DNA-directed RNA polymerase subunit delta	68.3	57.8	57.4
MGA_1407	LOCUS_13890	sequence20:49487..49666(+)	partial			WP_002262735.1	nitroreductase family protein	94.9	28.0	62.5
MGA_1413	LOCUS_13940	sequence21:5040..5288(+)	partial			WP_003546169.1	N-6 DNA methylase	74.4	26.4	45.9
MGA_1417	LOCUS_13980	sequence21:8555..8767(+)	partial			WP_050340461.1	site-specific integrase	100.0	35.9	95.7
MGA_1418	LOCUS_13990	sequence21:9096..9296(-)	frameshift		9427,9109	WP_011101297.1	tyrosine-type recombinase/integrase	69.7	23.6	60.9
MGA_1419	LOCUS_14000	sequence21:9293..9661(-)	frameshift		9110	WP_003646539.1	tyrosine-type recombinase/integrase	59.0	39.3	47.2
MGA_1421	LOCUS_14020	sequence21:11225..11497(+)	partial			WP_081512349.1	ISL3 family transposase	93.3	20.7	36.0
MGA_1422	LOCUS_14030	sequence21:11522..11851(+)	partial			WP_011222015.1	AAA family ATPase	89.0	36.5	63.9
MGA_1446	LOCUS_14260	sequence21:34310..34657(+)	partial			WP_002214977.1	type II toxin-antitoxin system PemK/MazF family toxin	71.3	69.2	34.1
MGA_1457	LOCUS_14360	sequence22:6443..6964(+)	internal_stop_codon	6962..6964(+)		WP_011674190.1	IS3 family transposase	100.0	83.6	99.4
MGA_1459	LOCUS_14380	sequence22:10154..10297(+)	frameshift		10270	WP_003641651.1	beta-phosphoglucomutase	78.7	16.6	83.8
MGA_1460	LOCUS_14390	sequence22:10312..10824(+)	frameshift		10270	WP_003641651.1	beta-phosphoglucomutase	100.0	76.2	64.7
MGA_1463	LOCUS_14420	sequence22:12472..12984(+)	partial			WP_168722861.1	IS3 family transposase	97.6	63.3	44.9
MGA_1464	LOCUS_14430	sequence22:13459..13749(-)	internal_stop_codon	13459..13461(-)		WP_011674190.1	IS3 family transposase	100.0	46.4	97.9
MGA_1467	LOCUS_14460	sequence22:14459..14935(+)	partial			WP_002287843.1	IS256-like element ISEfa13 family transposase	95.6	38.8	62.3
MGA_1468	LOCUS_14470	sequence22:15003..15407(+)	partial			WP_104859673.1	IS256 family transposase	98.5	33.7	56.8
MGA_1475	LOCUS_14540	sequence22:22708..23004(-)	partial			WP_156656235.1	IS5 family transposase	100.0	38.1	63.3
