{ "type": "genome", "identifier": "GCF_002909445.1", "organism": "Arthrobacter glacialis", "title": "Arthrobacter glacialis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002909445.1", "bioproject": "PRJNA224116", "biosample": "SAMN08041339", "wgs_master": "PPXC00000000.1", "refseq_category": "na", "taxid": "1664", "species_taxid": "1664", "organism_name": "Arthrobacter glacialis", "infraspecific_name": "strain=HLT2-12-2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/30", "asm_name": "ASM290944v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_002909445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/909/445/GCF_002909445.1_ASM290944v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4469153", "genome_size_ungapped": "4469085", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002909445.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4104", "protein_coding_gene_count": "3985", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-30", "dateModified": "2018-01-30", "datePublished": "2018-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter glacialis" ], "sample_taxid": [ "1664" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.263 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4469153", "Number of Sequences": "63", "Longest Sequences (bp)": "522073", "N50 (bp)": "269550", "Gap Ratio (%)": "0.001522", "GCcontent (%)": "61.4", "Number of CDSs": "4092", "Average Protein Length": "316.5", "Coding Ratio (%)": "86.9", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter glacialis", "strain": "strain=HLT2-12-2", "accession": "GCA_002909445.1", "taxid": 1664, "species_taxid": 1664, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1458, "total_fragments": 1459, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arthrobacter alpinus", "strain": "strain=DSM 22274", "accession": "GCA_900105965.1", "taxid": 656366, "species_taxid": 656366, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1464, "matched_fragments": 777, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter stackebrandtii", "strain": "strain=DSM 16005", "accession": "GCA_017876675.1", "taxid": 272161, "species_taxid": 272161, "relation_to_type": "type", "validated": true, "ani": 81.2346, "matched_fragments": 731, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter psychrolactophilus", "strain": "strain=B7", "accession": "GCA_003219795.1", "taxid": 92442, "species_taxid": 92442, "relation_to_type": "type", "validated": true, "ani": 80.9442, "matched_fragments": 646, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter psychrochitiniphilus", "strain": "strain=DSM 23143", "accession": "GCA_013408645.1", "taxid": 291045, "species_taxid": 291045, "relation_to_type": "type", "validated": true, "ani": 80.458, "matched_fragments": 606, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter livingstonensis", "strain": "strain=LI2", "accession": "GCA_003219815.1", "taxid": 670078, "species_taxid": 670078, "relation_to_type": "type", "validated": true, "ani": 80.4417, "matched_fragments": 667, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter wenxiniae", "strain": "strain=AETb3-4", "accession": "GCA_013376105.1", "taxid": 2713570, "species_taxid": 2713570, "relation_to_type": "type", "validated": true, "ani": 80.4389, "matched_fragments": 614, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter psychrochitiniphilus", "strain": "strain=GP3", "accession": "GCA_003185915.1", "taxid": 291045, "species_taxid": 291045, "relation_to_type": "type", "validated": true, "ani": 80.4255, "matched_fragments": 616, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter dokdonellae", "strain": "", "accession": "GCA_003268655.1", "taxid": 2211210, "species_taxid": 2211210, "relation_to_type": "type", "validated": true, "ani": 79.9705, "matched_fragments": 604, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 78.8991, "matched_fragments": 235, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cryoconiti", "strain": "strain=Cr6-08", "accession": "GCA_020905375.1", "taxid": 748907, "species_taxid": 748907, "relation_to_type": "type", "validated": true, "ani": 78.7767, "matched_fragments": 349, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.0424, "matched_fragments": 275, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.976, "matched_fragments": 280, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002909445.1", "gtdb_species": "s__Specibacter glacialis", "ani": 100.0, "matched_fragments": 1458, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "99.29", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900105965.1", "gtdb_species": "s__Specibacter alpinus", "ani": 82.1394, "matched_fragments": 778, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002929705.1", "gtdb_species": "s__Specibacter sp002929705", "ani": 81.4393, "matched_fragments": 749, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000785535.1", "gtdb_species": "s__Specibacter sp000785535", "ani": 81.2641, "matched_fragments": 749, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002929305.1", "gtdb_species": "s__Specibacter sp002929305", "ani": 81.2263, "matched_fragments": 676, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876675.1", "gtdb_species": "s__Specibacter stackebrandtii", "ani": 81.2219, "matched_fragments": 733, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016820535.1", "gtdb_species": "s__Specibacter sp016820535", "ani": 81.1014, "matched_fragments": 703, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001281315.1", "gtdb_species": "s__Specibacter sp001281315", "ani": 80.951, "matched_fragments": 728, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003219795.1", "gtdb_species": "s__Specibacter psychrolactophilus", "ani": 80.9442, "matched_fragments": 646, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001294625.1", "gtdb_species": "s__Specibacter alpinus_A", "ani": 80.5056, "matched_fragments": 645, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.48", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003219815.1", "gtdb_species": "s__Specibacter livingstonensis", "ani": 80.4201, "matched_fragments": 670, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013376095.1", "gtdb_species": "s__Specibacter sp013376095", "ani": 80.1909, "matched_fragments": 605, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.105, "cell_length": 0.019, "doubling_h": null, "growth_tmp": 26.947, "optimum_tmp": 26.833, "optimum_ph": 7.7, "genome_size": 4207472.204, "gc_content": 64.7, "coding_genes": 3997.0, "rRNA16S_genes": 7.0, "tRNA_genes": 50.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.235, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.03, "aerobic_respiration": 0.969, "mesophilic_range_tmp": 0.8, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.2, "bacillus_cell_shape": 0.466, "coccus_cell_shape": 0.333, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "glacialis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }