{
    "type": "genome",
    "identifier": "GCF_002911695.1",
    "organism": "Gracilimonas amylolytica",
    "title": "Gracilimonas amylolytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Second Institute of Oceanography, State Oceanic Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002911695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08398453",
        "wgs_master": "PQBS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1749045",
        "species_taxid": "1749045",
        "organism_name": "Gracilimonas amylolytica",
        "infraspecific_name": "strain=LA399",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/02/02",
        "asm_name": "ASM291169v1",
        "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration",
        "gbrs_paired_asm": "GCA_002911695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/911/695/GCF_002911695.1_ASM291169v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3149695",
        "genome_size_ungapped": "3148752",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002911695.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "2773",
        "protein_coding_gene_count": "2704",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-02-02",
    "dateModified": "2018-02-02",
    "datePublished": "2018-02-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gracilimonas amylolytica"
        ],
        "sample_taxid": [
            "1749045"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: East Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.896 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3149695",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "560937",
        "N50 (bp)": "322175",
        "Gap Ratio (%)": "0.029971",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "2690",
        "Average Protein Length": "346.8",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "12",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gracilimonas amylolytica",
                "strain": "strain=LA399",
                "accession": "GCA_002911695.1",
                "taxid": 1749045,
                "species_taxid": 1749045,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1031,
                "total_fragments": 1033,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gracilimonas tropica",
                "strain": "strain=DSM 19535",
                "accession": "GCA_000375425.1",
                "taxid": 454600,
                "species_taxid": 454600,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2572,
                "matched_fragments": 287,
                "total_fragments": 1033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gracilimonas mengyeensis",
                "strain": "strain=DSM 21985",
                "accession": "GCA_900182705.1",
                "taxid": 1302730,
                "species_taxid": 1302730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4725,
                "matched_fragments": 198,
                "total_fragments": 1033,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Balneola vulgaris",
                "strain": "strain=DSM 17893",
                "accession": "GCA_000375465.1",
                "taxid": 287535,
                "species_taxid": 287535,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.406,
                "matched_fragments": 56,
                "total_fragments": 1033,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002911695.1",
                "gtdb_species": "s__Gracilimonas amylolytica",
                "ani": 100.0,
                "matched_fragments": 1031,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Gracilimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002480645.1",
                "gtdb_species": "s__UBA7797 sp002480645",
                "ani": 79.5906,
                "matched_fragments": 97,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__UBA7797",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002694685.1",
                "gtdb_species": "s__Gracilimonas sp002694685",
                "ani": 79.4424,
                "matched_fragments": 227,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Gracilimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000375425.1",
                "gtdb_species": "s__Gracilimonas tropica",
                "ani": 79.2596,
                "matched_fragments": 287,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Gracilimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014762685.1",
                "gtdb_species": "s__Gracilimonas sp014762685",
                "ani": 79.198,
                "matched_fragments": 288,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Gracilimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017641085.1",
                "gtdb_species": "s__Gracilimonas sp017641085",
                "ani": 79.1035,
                "matched_fragments": 264,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Gracilimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002696035.1",
                "gtdb_species": "s__Gracilimonas sp002696035",
                "ani": 78.2147,
                "matched_fragments": 307,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Gracilimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900182705.1",
                "gtdb_species": "s__Gracilimonas mengyeensis",
                "ani": 77.4725,
                "matched_fragments": 198,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Gracilimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006969905.1",
                "gtdb_species": "s__Balneola sp006969905",
                "ani": 77.4149,
                "matched_fragments": 60,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Balneola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001650905.1",
                "gtdb_species": "s__Balneola sp001650905",
                "ani": 76.8821,
                "matched_fragments": 72,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Balneola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.92",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017640785.1",
                "gtdb_species": "s__Balneola sp017640785",
                "ani": 76.8516,
                "matched_fragments": 75,
                "total_fragments": 1033,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Balneola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.776,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 32.25,
        "optimum_ph": 7.5,
        "genome_size": 4249061.5,
        "gc_content": 42.9,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.666,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.333,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gracilimonas",
        "amylolytica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}