{ "type": "genome", "identifier": "GCF_002915575.1", "organism": "Superficieibacter electus", "title": "Superficieibacter electus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002915575.1", "bioproject": "PRJNA224116", "biosample": "SAMN07405751", "wgs_master": "PQGD00000000.1", "refseq_category": "reference genome", "taxid": "2022662", "species_taxid": "2022662", "organism_name": "Superficieibacter electus", "infraspecific_name": "strain=BP-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/04", "asm_name": "ASM291557v1", "asm_submitter": "Washington University", "gbrs_paired_asm": "GCA_002915575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/915/575/GCF_002915575.1_ASM291557v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5680147", "genome_size_ungapped": "5680147", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002915575.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5489", "protein_coding_gene_count": "5271", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-04", "dateModified": "2018-02-04", "datePublished": "2018-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Superficieibacter electus" ], "sample_taxid": [ "2022662" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pakistan" ], "sample_host_location_id": [], "data_size": "1.618 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5680147", "Number of Sequences": "89", "Longest Sequences (bp)": "430843", "N50 (bp)": "219643", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.4", "Number of CDSs": "5375", "Average Protein Length": "307.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "8", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 82.5229, "matched_fragments": 870, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera georgiana", "strain": "strain=ATCC 51603", "accession": "GCA_001654985.1", "taxid": 73098, "species_taxid": 73098, "relation_to_type": "type", "validated": true, "ani": 81.5806, "matched_fragments": 772, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2208, "matched_fragments": 778, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera ascorbata", "strain": "strain=ATCC 33433", "accession": "GCA_000735365.1", "taxid": 51288, "species_taxid": 51288, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1444, "matched_fragments": 753, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=FDAARGOS_1489", "accession": "GCA_020099335.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 81.0878, "matched_fragments": 813, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=JCM 1661", "accession": "GCA_018323885.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 81.004, "matched_fragments": 809, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.0026, "matched_fragments": 814, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_015965555.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 80.9937, "matched_fragments": 784, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 80.9404, "matched_fragments": 794, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 80.939, "matched_fragments": 759, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella boydii", "strain": "strain=DMB SH130", "accession": "GCA_003572535.1", "taxid": 621, 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28901, "relation_to_type": "type", "validated": true, "ani": 80.8622, "matched_fragments": 737, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica", "strain": "strain=FDAARGOS_768", "accession": "GCA_006365335.1", "taxid": 28901, "species_taxid": 28901, "relation_to_type": "type", "validated": true, "ani": 80.8236, "matched_fragments": 747, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 80.8212, "matched_fragments": 777, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 80.7665, "matched_fragments": 804, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pasteurii", "strain": "", "accession": "GCA_902158725.1", "taxid": 2587529, "species_taxid": 2587529, "relation_to_type": "type", "validated": true, "ani": 80.7579, "matched_fragments": 766, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella sonnei", "strain": "strain=NCTC12984", "accession": "GCA_900457155.1", "taxid": 624, "species_taxid": 624, "relation_to_type": "type", "validated": true, "ani": 80.7178, "matched_fragments": 708, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella boydii", "strain": "strain=FDAARGOS_1139", "accession": "GCA_016726285.1", "taxid": 621, "species_taxid": 621, "relation_to_type": "type", "validated": true, "ani": 80.692, "matched_fragments": 696, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella huaxiensis", "strain": "strain=WCHKl090001", "accession": "GCA_003261575.2", "taxid": 2153354, "species_taxid": 2153354, "relation_to_type": "type", "validated": true, "ani": 80.6845, "matched_fragments": 808, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NCTC13727", "accession": "GCA_900636985.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 80.6776, "matched_fragments": 771, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella boydii", "strain": "strain=NCTC12985", "accession": "GCA_900457095.1", "taxid": 621, "species_taxid": 621, "relation_to_type": "type", "validated": true, "ani": 80.6548, "matched_fragments": 696, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shigella sonnei", 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"type", "validated": true, "ani": 80.1941, "matched_fragments": 689, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000319325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 80.1341, "matched_fragments": 673, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 80.1124, "matched_fragments": 674, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=NBRC 105704", "accession": "GCA_000248015.2", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 79.9561, "matched_fragments": 679, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella cyperi", "strain": "strain=FJAT-53720", "accession": "GCA_017354985.1", "taxid": 2814292, "species_taxid": 2814292, "relation_to_type": "type", "validated": true, "ani": 76.0948, "matched_fragments": 56, "total_fragments": 1855, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002915575.1", "gtdb_species": "s__Superficieibacter electus", "ani": 100.0, "matched_fragments": 1849, "total_fragments": 1855, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Superficieibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_015234305.1", "gtdb_species": "s__Superficieibacter sp900766525", "ani": 86.8391, "matched_fragments": 1369, "total_fragments": 1855, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Superficieibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001187865.1", "gtdb_species": "s__Superficieibacter sp001187865", "ani": 83.5836, "matched_fragments": 1077, "total_fragments": 1855, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Superficieibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.94", 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"min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000759835.1", "gtdb_species": "s__Citrobacter_A sedlakii", "ani": 80.8994, "matched_fragments": 789, "total_fragments": 1855, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_003594915.1", "gtdb_species": "s__Enterobacter chuandaensis", "ani": 80.8884, "matched_fragments": 784, "total_fragments": 1855, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.92", 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