{ "type": "genome", "identifier": "GCF_002915595.1", "organism": "Zhongshania marina", "title": "Zhongshania marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002915595.1", "bioproject": "PRJNA224116", "biosample": "SAMN08281192", "wgs_master": "PQGG00000000.1", "refseq_category": "reference genome", "taxid": "2304603", "species_taxid": "2304603", "organism_name": "Zhongshania marina", "infraspecific_name": "strain=ZX-21", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/04", "asm_name": "ASM291559v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_002915595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/915/595/GCF_002915595.1_ASM291559v1", "excluded_from_refseq": "na", 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seawater of East Sea,Zhoushan" ], "sample_host_location_id": [], "data_size": "1.181 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4132473", "Number of Sequences": "46", "Longest Sequences (bp)": "351037", "N50 (bp)": "149394", "Gap Ratio (%)": "0.003630", "GCcontent (%)": "49.1", "Number of CDSs": "3779", "Average Protein Length": "322.9", "Coding Ratio (%)": "88.6", "Number of rRNAs": "4", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zhongshania aliphaticivorans", "strain": "strain=SM-2", "accession": "GCA_001586255.1", "taxid": 1470434, "species_taxid": 1470434, "relation_to_type": "type", "validated": true, "ani": 79.4277, "matched_fragments": 389, 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"mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001586255.1", "gtdb_species": "s__Zhongshania aliphaticivorans", "ani": 79.4228, "matched_fragments": 389, "total_fragments": 1352, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Zhongshania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014202945.1", "gtdb_species": "s__Zhongshania antarctica", "ani": 78.9619, "matched_fragments": 356, "total_fragments": 1352, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Zhongshania", "ani_circumscription_radius": 95.0, 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"min_intra_species_ani": "97.89", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_016132545.1", "gtdb_species": "s__CSC3-9 sp016132545", "ani": 77.312, "matched_fragments": 138, "total_fragments": 1352, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__CSC3-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 4204359.332, "gc_content": 50.7, "coding_genes": 3672.0, "rRNA16S_genes": 3.0, "tRNA_genes": 44.0, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Zhongshania", "marina" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }