{ "type": "genome", "identifier": "GCF_002916695.1", "organism": "Alkalispirochaeta sphaeroplastigenens", "title": "Alkalispirochaeta sphaeroplastigenens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UoH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002916695.1", "bioproject": "PRJNA224116", "biosample": "SAMN04348345", "wgs_master": "LPWH00000000.1", "refseq_category": "reference genome", "taxid": "1187066", "species_taxid": "1187066", "organism_name": "Alkalispirochaeta sphaeroplastigenens", "infraspecific_name": "strain=JC133", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/05", "asm_name": "ASM291669v1", "asm_submitter": "UoH", "gbrs_paired_asm": "GCA_002916695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/916/695/GCF_002916695.1_ASM291669v1", "excluded_from_refseq": "na", 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"India: Lonar" ], "sample_host_location_id": [], "data_size": "0.945 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3354883", "Number of Sequences": "129", "Longest Sequences (bp)": "146719", "N50 (bp)": "95244", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "2820", "Average Protein Length": "354.3", "Coding Ratio (%)": "89.3", "Number of rRNAs": "4", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alkalispirochaeta americana", "strain": "strain=ASpG1", "accession": "GCA_900156105.1", "taxid": 159291, "species_taxid": 159291, "relation_to_type": "type", "validated": true, "ani": 82.8576, "matched_fragments": 795, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000373545.1", "gtdb_species": "s__Alkalispirochaeta alkalica", "ani": 98.2647, "matched_fragments": 959, "total_fragments": 1058, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__DSM-27196;f__Alkalispirochaetaceae;g__Alkalispirochaeta", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900156105.1", "gtdb_species": "s__Alkalispirochaeta americana", "ani": 82.8576, "matched_fragments": 795, "total_fragments": 1058, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__DSM-27196;f__Alkalispirochaetaceae;g__Alkalispirochaeta", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007695175.1", "gtdb_species": "s__Alkalispirochaeta sp007695175", "ani": 76.6631, "matched_fragments": 143, "total_fragments": 1058, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__DSM-27196;f__Alkalispirochaetaceae;g__Alkalispirochaeta", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.699, "cell_length": 1.176, "doubling_h": 0.778, "growth_tmp": 37.0, "optimum_tmp": 37.25, "optimum_ph": 9.75, "genome_size": 3354883.0, "gc_content": 60.513, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Alkalispirochaeta", "sphaeroplastigenens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }