{ "type": "genome", "identifier": "GCF_002923025.1", "organism": "Lelliottia aquatilis", "title": "Lelliottia aquatilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Justus-Liebig University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002923025.1", "bioproject": "PRJNA224116", "biosample": "SAMN08450087", "wgs_master": "PQVW00000000.1", "refseq_category": "na", "taxid": "2080838", "species_taxid": "2080838", "organism_name": "Lelliottia aquatilis", "infraspecific_name": "strain=6331-17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/07", "asm_name": "ASM292302v1", "asm_submitter": "Justus-Liebig University", "gbrs_paired_asm": "GCA_002923025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/923/025/GCF_002923025.1_ASM292302v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4774414", "genome_size_ungapped": "4774414", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002923025.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4613", "protein_coding_gene_count": "4423", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-07", "dateModified": "2018-02-07", "datePublished": "2018-02-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Lelliottia aquatilis" ], "sample_taxid": [ "2080838" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.358 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4774414", "Number of Sequences": "37", "Longest Sequences (bp)": "572671", "N50 (bp)": "202682", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.2", "Number of CDSs": "4449", "Average Protein Length": "316.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "5", "Number of tRNAs": "81", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lelliottia aquatilis", "strain": "strain=6331-17", "accession": "GCA_002923025.1", "taxid": 2080838, "species_taxid": 2080838, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1567, "total_fragments": 1571, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lelliottia nimipressuralis", "strain": "strain=CCUG 25894", "accession": "GCA_004115925.1", "taxid": 69220, "species_taxid": 69220, "relation_to_type": "type", "validated": true, "ani": 89.9229, "matched_fragments": 1284, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=LMG 2784", "accession": "GCA_002553545.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 85.8137, "matched_fragments": 1137, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=FDAARGOS 1444", "accession": "GCA_019047465.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 85.8048, "matched_fragments": 1172, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=NBRC 105700", "accession": "GCA_001514515.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 85.7629, "matched_fragments": 1170, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter quasimori", "strain": "strain=090044", "accession": "GCA_003964905.1", "taxid": 2838947, "species_taxid": 2838947, "relation_to_type": "type", "validated": true, "ani": 84.859, "matched_fragments": 1125, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 84.7945, "matched_fragments": 1149, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 84.7708, "matched_fragments": 1147, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 84.6898, "matched_fragments": 1067, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 84.6709, "matched_fragments": 1116, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter mori", "strain": "strain=LMG 25706", "accession": "GCA_000211415.1", "taxid": 539813, "species_taxid": 539813, "relation_to_type": "type", "validated": true, "ani": 84.5515, "matched_fragments": 1099, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 84.503, "matched_fragments": 1099, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 84.4944, "matched_fragments": 1073, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=FDAARGOS_1533", "accession": "GCA_020097195.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 84.4689, "matched_fragments": 1127, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_018987305.1", "taxid": 2815358, "species_taxid": 2815358, "relation_to_type": "type", "validated": true, "ani": 83.396, "matched_fragments": 1023, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002271215.1", "gtdb_species": "s__Lelliottia jeotgali", "ani": 98.815, "matched_fragments": 1410, "total_fragments": 1571, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Lelliottia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.80", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCF_004115925.1", "gtdb_species": "s__Lelliottia nimipressuralis", "ani": 89.9229, "matched_fragments": 1284, "total_fragments": 1571, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Lelliottia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_009668015.1", "gtdb_species": "s__Lelliottia sp009668015", "ani": 86.9124, "matched_fragments": 1161, "total_fragments": 1571, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Lelliottia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 29.75, "optimum_tmp": 30.0, "optimum_ph": null, "genome_size": 4698708.143, "gc_content": 54.525, "coding_genes": 4299.166, "rRNA16S_genes": 7.0, "tRNA_genes": 82.75, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lelliottia", "aquatilis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }