{ "type": "genome", "identifier": "GCF_002924365.1", "organism": "Chromobacterium alticapitis", "title": "Chromobacterium alticapitis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Midwestern University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002924365.1", "bioproject": "PRJNA224116", "biosample": "SAMN08377137", "wgs_master": "PQWB00000000.1", "refseq_category": "reference genome", "taxid": "2073169", "species_taxid": "2073169", "organism_name": "Chromobacterium alticapitis", "infraspecific_name": "strain=MWU14-2602", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/07", "asm_name": "ASM292436v1", "asm_submitter": "Midwestern University", "gbrs_paired_asm": "GCA_002924365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/924/365/GCF_002924365.1_ASM292436v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4526407", "genome_size_ungapped": "4525847", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "216", "contig_count": "216", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002924365.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4366", "protein_coding_gene_count": "4187", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-07", "dateModified": "2018-02-07", "datePublished": "2018-02-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Chromobacterium alticapitis" ], "sample_taxid": [ "2073169" ], "sample_host_organism": [ "Cranberry" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: MA, Cape Cod National Seashore" ], "sample_host_location_id": [], "data_size": "1.264 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4526407", "Number of Sequences": "216", "Longest Sequences (bp)": "401085", "N50 (bp)": "69582", "Gap Ratio (%)": "0.012372", "GCcontent (%)": "63.4", "Number of CDSs": "4090", "Average Protein Length": "314.9", "Coding Ratio (%)": "85.4", "Number of rRNAs": "2", "Number of tRNAs": "87", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chromobacterium alticapitis", "strain": "strain=MWU14-2602", "accession": "GCA_002924365.1", "taxid": 2073169, "species_taxid": 2073169, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1427, "total_fragments": 1432, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chromobacterium paludis", "strain": "strain=IIBBL 257-1", "accession": "GCA_008275125.1", "taxid": 2605945, "species_taxid": 2605945, "relation_to_type": "type", "validated": true, "ani": 88.84, "matched_fragments": 1112, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sinusclupearum", "strain": "strain=MWU13-2610", "accession": "GCA_002902845.1", "taxid": 2077146, "species_taxid": 2077146, "relation_to_type": "type", "validated": true, "ani": 87.26, "matched_fragments": 1065, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium amazonense", "strain": "strain=DSM 26508", "accession": "GCA_001855565.1", "taxid": 1382803, "species_taxid": 1382803, "relation_to_type": "type", "validated": true, "ani": 87.0498, "matched_fragments": 1018, 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"status": "below_threshold" }, { "organism_name": "Chromobacterium vaccinii", "strain": "strain=MWU205", "accession": "GCA_000971335.1", "taxid": 1108595, "species_taxid": 1108595, "relation_to_type": "type", "validated": true, "ani": 86.7353, "matched_fragments": 1053, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium subtsugae", "strain": "strain=PRAA4-1", "accession": "GCA_001676875.1", "taxid": 251747, "species_taxid": 251747, "relation_to_type": "type", "validated": true, "ani": 86.6439, "matched_fragments": 1054, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium piscinae", "strain": "strain=DSM 23278", "accession": "GCA_021129175.1", "taxid": 686831, "species_taxid": 686831, "relation_to_type": "type", "validated": true, "ani": 86.4906, "matched_fragments": 1036, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alkanivorans", "strain": "strain=IITR-71", "accession": "GCA_016937655.1", "taxid": 1071719, "species_taxid": 1071719, "relation_to_type": "type", "validated": true, "ani": 83.2865, "matched_fragments": 909, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 83.2285, "matched_fragments": 825, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella potus", "strain": "strain=NCTC13336", "accession": "GCA_900451175.1", "taxid": 265175, "species_taxid": 265175, "relation_to_type": "type", "validated": true, "ani": 76.6338, "matched_fragments": 88, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016428945.1", "gtdb_species": "s__Chromobacterium sp016428945", "ani": 87.1519, "matched_fragments": 1051, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001855565.1", "gtdb_species": "s__Chromobacterium amazonense", "ani": 87.0374, "matched_fragments": 1019, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", 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"num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.219, "cell_length": 0.336, "doubling_h": -0.081, "growth_tmp": 27.083, "optimum_tmp": 29.85, "optimum_ph": 6.416, "genome_size": 4672887.016, "gc_content": 64.488, "coding_genes": 4336.208, "rRNA16S_genes": 8.0, "tRNA_genes": 97.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.8, "coccus_cell_shape": 0.2, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chromobacterium", "alticapitis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }