{ "type": "genome", "identifier": "GCF_002924445.1", "organism": "Minwuia thermotolerans", "title": "Minwuia thermotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002924445.1", "bioproject": "PRJNA224116", "biosample": "SAMN08097999", "wgs_master": "PIGG00000000.1", "refseq_category": "reference genome", "taxid": "2056226", "species_taxid": "2056226", "organism_name": "Minwuia thermotolerans", "infraspecific_name": "strain=SY3-15", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/07", "asm_name": "ASM292444v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_002924445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/924/445/GCF_002924445.1_ASM292444v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4903946", "genome_size_ungapped": "4903796", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002924445.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "4679", "protein_coding_gene_count": "4557", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-07", "dateModified": "2018-02-07", "datePublished": "2018-02-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Minwuia thermotolerans" ], "sample_taxid": [ "2056226" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: East China Sea" ], "sample_host_location_id": [], "data_size": "1.337 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4903946", "Number of Sequences": "82", "Longest Sequences (bp)": "538701", "N50 (bp)": "191395", "Gap Ratio (%)": "0.003100", "GCcontent (%)": "67.2", "Number of CDSs": "4589", "Average Protein Length": "320.7", "Coding Ratio (%)": "90.0", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Minwuia thermotolerans", "strain": "strain=SY3-15", "accession": "GCA_002924445.1", "taxid": 2056226, "species_taxid": 2056226, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1567, "total_fragments": 1589, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 77.169, "matched_fragments": 476, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 77.1457, "matched_fragments": 474, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 77.1385, "matched_fragments": 415, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 76.6817, "matched_fragments": 300, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.6527, "matched_fragments": 393, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum agricola", "strain": "strain=CC-HIH038", "accession": "GCA_017876095.1", "taxid": 1720247, "species_taxid": 1720247, "relation_to_type": "type", "validated": true, "ani": 76.6288, "matched_fragments": 404, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 76.6198, "matched_fragments": 255, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga arabica", "strain": "strain=SV2184P", "accession": "GCA_016811235.1", "taxid": 1128671, "species_taxid": 1128671, "relation_to_type": "type", "validated": true, "ani": 76.6051, "matched_fragments": 164, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 76.5884, "matched_fragments": 213, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio sodomensis", "strain": "strain=DSM 9895", "accession": "GCA_016583645.1", "taxid": 1088, "species_taxid": 1088, "relation_to_type": "type", 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"Methylobacterium variabile", "strain": "strain=DSM 16961", "accession": "GCA_001043975.1", "taxid": 298794, "species_taxid": 298794, "relation_to_type": "type", "validated": true, "ani": 76.1507, "matched_fragments": 329, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 76.1163, "matched_fragments": 283, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 75.6331, "matched_fragments": 235, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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