{ "type": "genome", "identifier": "GCF_002925845.1", "organism": "Roseovarius nitratireducens", "title": "Roseovarius nitratireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002925845.1", "bioproject": "PRJNA224116", "biosample": "SAMN07768646", "wgs_master": "PDNI00000000.1", "refseq_category": "reference genome", "taxid": "2044597", "species_taxid": "2044597", "organism_name": "Roseovarius nitratireducens", "infraspecific_name": "strain=TFZ", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/12", "asm_name": "ASM292584v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_002925845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/845/GCF_002925845.1_ASM292584v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3918493", "genome_size_ungapped": "3918348", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002925845.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "3956", "protein_coding_gene_count": "3822", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-12", "dateModified": "2018-02-12", "datePublished": "2018-02-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius nitratireducens" ], "sample_taxid": [ "2044597" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.085 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3918493", "Number of Sequences": "90", "Longest Sequences (bp)": "476439", "N50 (bp)": "147819", "Gap Ratio (%)": "0.003726", "GCcontent (%)": "65.4", "Number of CDSs": "3849", "Average Protein Length": "302.9", "Coding Ratio (%)": "89.2", "Number of rRNAs": "4", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius nitratireducens", "strain": "strain=TFZ", "accession": "GCA_002925845.1", "taxid": 2044597, "species_taxid": 2044597, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1271, "total_fragments": 1278, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius tolerans", "strain": "strain=DSM 11457", "accession": "GCA_900109855.1", "taxid": 74031, "species_taxid": 74031, "relation_to_type": "type", "validated": true, "ani": 82.3188, "matched_fragments": 752, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius azorensis", "strain": "strain=DSM 100674", "accession": "GCA_900109455.1", "taxid": 1287727, "species_taxid": 1287727, "relation_to_type": "type", "validated": true, "ani": 80.5385, "matched_fragments": 704, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 79.656, "matched_fragments": 557, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 79.6273, "matched_fragments": 560, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius mucosus", "strain": "strain=DSM 17069", "accession": "GCA_000768555.3", "taxid": 215743, "species_taxid": 215743, "relation_to_type": "type", "validated": true, "ani": 79.5701, "matched_fragments": 632, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 79.3157, "matched_fragments": 504, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 79.0394, "matched_fragments": 484, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 79.0015, "matched_fragments": 546, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 78.8965, "matched_fragments": 495, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.8316, "matched_fragments": 455, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 78.6282, "matched_fragments": 475, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salibaculum halophilum", "strain": "strain=WDS1C4", "accession": "GCA_002094885.1", "taxid": 1914408, "species_taxid": 1914408, "relation_to_type": "type", "validated": true, "ani": 78.6028, "matched_fragments": 412, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius lutimaris", "strain": "strain=DSM 28463", "accession": "GCA_900115165.1", "taxid": 1005928, "species_taxid": 1005928, "relation_to_type": "type", 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"total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 77.9309, "matched_fragments": 366, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia rufa", "strain": "strain=MOLA 401", "accession": "GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 77.6785, "matched_fragments": 339, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseitranquillus sediminis", "strain": "strain=MCCB 386", "accession": "GCA_016918935.1", "taxid": 2809051, "species_taxid": 2809051, "relation_to_type": "type", "validated": true, "ani": 77.6089, "matched_fragments": 316, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.2308, "matched_fragments": 380, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.1574, "matched_fragments": 371, "total_fragments": 1278, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002925845.1", "gtdb_species": "s__Roseovarius nitratireducens", "ani": 100.0, "matched_fragments": 1272, "total_fragments": 1278, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseovarius", "nitratireducens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }