{ "type": "genome", "identifier": "GCF_002932875.1", "organism": "Rathayibacter tritici", "title": "Rathayibacter tritici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Oregon State University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002932875.1", "bioproject": "PRJNA224116", "biosample": "SAMN08438750", "wgs_master": "PSWS00000000.1", "refseq_category": "na", "taxid": "33888", "species_taxid": "33888", "organism_name": "Rathayibacter tritici", "infraspecific_name": "strain=DSM 7486", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/18", "asm_name": "ASM293287v1", "asm_submitter": "Oregon State University", "gbrs_paired_asm": "GCA_002932875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/932/875/GCF_002932875.1_ASM293287v1", "excluded_from_refseq": "na", 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"Egypt" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3174114", "Number of Sequences": "91", "Longest Sequences (bp)": "288414", "N50 (bp)": "72699", "Gap Ratio (%)": "0.011972", "GCcontent (%)": "69.8", "Number of CDSs": "3005", "Average Protein Length": "308.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rathayibacter tritici", "strain": "strain=DSM 7486", "accession": "GCA_002932875.1", "taxid": 33888, "species_taxid": 33888, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1009, "total_fragments": 1014, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_009806975.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 92.0784, "matched_fragments": 867, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=VKM Ac-1601", "accession": "GCA_900215645.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 92.0737, "matched_fragments": 867, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter rathayi", "strain": "strain=DSM 7485", "accession": "GCA_007828845.1", "taxid": 33887, "species_taxid": 33887, "relation_to_type": "type", "validated": true, "ani": 92.048, "matched_fragments": 871, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter 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"GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 78.7515, "matched_fragments": 327, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CPCC 202695", "accession": "GCA_004366335.2", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 78.568, "matched_fragments": 368, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.4444, "matched_fragments": 356, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002932875.1", 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