{
    "type": "genome",
    "identifier": "GCF_002933875.1",
    "organism": "Desulfocucumis palustris",
    "title": "Desulfocucumis palustris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Low Temperature Science, Hokkaido University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002933875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00110453",
        "wgs_master": "BFAV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1898651",
        "species_taxid": "1898651",
        "organism_name": "Desulfocucumis palustris",
        "infraspecific_name": "strain=NAW-5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/02/07",
        "asm_name": "ASM293387v1",
        "asm_submitter": "Institute of Low Temperature Science, Hokkaido University",
        "gbrs_paired_asm": "GCA_002933875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/933/875/GCF_002933875.1_ASM293387v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3701809",
        "genome_size_ungapped": "3701809",
        "gc_percent": "49.000000",
        "replicon_count": "0",
        "scaffold_count": "184",
        "contig_count": "184",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002933875.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "3621",
        "protein_coding_gene_count": "3487",
        "non_coding_gene_count": "73",
        "pubmed_id": "30028279"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-02-07",
    "dateModified": "2018-02-07",
    "datePublished": "2018-02-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfocucumis palustris"
        ],
        "sample_taxid": [
            "1898651"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Hokkaido, Nopporo Forest Park"
        ],
        "sample_host_location_id": [],
        "data_size": "1.055 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3700838",
        "Number of Sequences": "179",
        "Longest Sequences (bp)": "284575",
        "N50 (bp)": "84451",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.1",
        "Number of CDSs": "3468",
        "Average Protein Length": "293.7",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfocucumis palustris",
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                "accession": "GCA_002933875.1",
                "taxid": 1898651,
                "species_taxid": 1898651,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1164,
                "total_fragments": 1166,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfurispora thermophila",
                "strain": "strain=DSM 16022",
                "accession": "GCA_000376385.1",
                "taxid": 265470,
                "species_taxid": 265470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8522,
                "matched_fragments": 66,
                "total_fragments": 1166,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfofundulus thermosubterraneus",
                "strain": "strain=DSM 16057",
                "accession": "GCA_900142025.1",
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                "species_taxid": 348840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1208,
                "matched_fragments": 55,
                "total_fragments": 1166,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002933875.1",
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                "ani": 100.0,
                "matched_fragments": 1164,
                "total_fragments": 1166,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfocucumaceae;g__Desulfocucumis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000233715.2",
                "gtdb_species": "s__Sporotomaculum gibsoniae",
                "ani": 78.9267,
                "matched_fragments": 89,
                "total_fragments": 1166,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfallaceae;g__Sporotomaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000961595.1",
                "gtdb_species": "s__Desulfocucumis sp000961595",
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                "matched_fragments": 301,
                "total_fragments": 1166,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfocucumaceae;g__Desulfocucumis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000961585.1",
                "gtdb_species": "s__BRHc4a sp000961585",
                "ani": 77.4493,
                "matched_fragments": 91,
                "total_fragments": 1166,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfocucumaceae;g__BRHc4a",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000802095.1",
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                "matched_fragments": 159,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfocucumaceae;g__BRHc4a",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000376385.1",
                "gtdb_species": "s__Desulfurispora thermophila",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfurisporaceae;g__Desulfurispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009428905.1",
                "gtdb_species": "s__Desulfofundulus_A thermobenzoicus",
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                "matched_fragments": 88,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfovirgulaceae;g__Desulfofundulus_A",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900142025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfovirgulaceae;g__Desulfofundulus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000214705.1",
                "gtdb_species": "s__Desulfofundulus kuznetsovii",
                "ani": 76.0907,
                "matched_fragments": 61,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Desulfovirgulaceae;g__Desulfofundulus",
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                "mean_intra_species_ani": "97.21",
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                "min_intra_species_af": "0.77",
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                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
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        "optimum_tmp": null,
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        "genome_size": 3701809.0,
        "gc_content": 49.079,
        "coding_genes": null,
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        "gram_stain": 1.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Desulfocucumis",
        "palustris"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}