{ "type": "genome", "identifier": "GCF_002934445.1", "organism": "Nonlabens xylanidelens", "title": "Nonlabens xylanidelens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002934445.1", "bioproject": "PRJNA224116", "biosample": "SAMN05661059", "wgs_master": "PTJE00000000.1", "refseq_category": "reference genome", "taxid": "191564", "species_taxid": "191564", "organism_name": "Nonlabens xylanidelens", "infraspecific_name": "strain=DSM 16809", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/21", "asm_name": "ASM293444v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002934445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/934/445/GCF_002934445.1_ASM293444v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3276842", "genome_size_ungapped": "3275117", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002934445.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3019", "protein_coding_gene_count": "2958", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-21", "dateModified": "2018-02-21", "datePublished": "2018-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonlabens xylanidelens" ], "sample_taxid": [ "191564" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Hope Cove, Devon" ], "sample_host_location_id": [], "data_size": "0.915 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3276842", "Number of Sequences": "21", "Longest Sequences (bp)": "1129740", "N50 (bp)": "512302", "Gap Ratio (%)": "0.052642", "GCcontent (%)": "34.7", "Number of CDSs": "2942", "Average Protein Length": "329.2", "Coding Ratio (%)": "88.7", "Number of rRNAs": "5", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonlabens xylanidelens", "strain": "strain=DSM 16809", "accession": "GCA_002934445.1", "taxid": 191564, "species_taxid": 191564, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1080, 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"below_threshold" }, { "organism_name": "Nonlabens dokdonensis", "strain": "strain=DSW-6", "accession": "GCA_000332115.1", "taxid": 328515, "species_taxid": 328515, "relation_to_type": "type", "validated": true, "ani": 79.4298, "matched_fragments": 563, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens ulvanivorans", "strain": "strain=PLR", "accession": "GCA_000732625.1", "taxid": 906888, "species_taxid": 906888, "relation_to_type": "type", "validated": true, "ani": 79.4167, "matched_fragments": 404, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens arenilitoris", "strain": "strain=KCTC 32109", "accession": "GCA_002954765.1", "taxid": 1217969, "species_taxid": 1217969, "relation_to_type": "type", "validated": true, "ani": 79.0316, "matched_fragments": 395, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens spongiae", 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2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.3768, "matched_fragments": 61, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 75.9619, "matched_fragments": 57, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum luteum", "strain": "strain=SM1352", "accession": "GCA_003449015.1", "taxid": 1548456, "species_taxid": 1548456, "relation_to_type": "type", "validated": true, "ani": 75.8959, "matched_fragments": 56, "total_fragments": 1081, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002934445.1", "gtdb_species": "s__Nonlabens 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"coding_genes": 2965.75, "rRNA16S_genes": 2.5, "tRNA_genes": 38.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Nonlabens", "xylanidelens" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }