{
    "type": "genome",
    "identifier": "GCF_002934605.1",
    "organism": "Neolewinella xylanilytica",
    "title": "Neolewinella xylanilytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002934605.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07621484",
        "wgs_master": "PTJC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1514080",
        "species_taxid": "1514080",
        "organism_name": "Neolewinella xylanilytica",
        "infraspecific_name": "strain=DSM 29526",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/02/21",
        "asm_name": "ASM293460v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_002934605.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/934/605/GCF_002934605.1_ASM293460v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5375778",
        "genome_size_ungapped": "5375613",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "13",
        "contig_count": "13",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002934605.1-RS_2024_11_26",
        "annotation_date": "2024-11-26",
        "total_gene_count": "4298",
        "protein_coding_gene_count": "4237",
        "non_coding_gene_count": "42",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-02-21",
    "dateModified": "2018-02-21",
    "datePublished": "2018-02-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Neolewinella xylanilytica"
        ],
        "sample_taxid": [
            "1514080"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.520 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5375778",
        "Number of Sequences": "13",
        "Longest Sequences (bp)": "2418183",
        "N50 (bp)": "2144556",
        "Gap Ratio (%)": "0.003069",
        "GCcontent (%)": "58.9",
        "Number of CDSs": "4342",
        "Average Protein Length": "369.0",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Neolewinella xylanilytica",
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                "relation_to_type": "type",
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            {
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                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neolewinella maritima",
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                "accession": "GCA_923081025.1",
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                "species_taxid": 1383882,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neolewinella aquimaris",
                "strain": "strain=DSM 105137",
                "accession": "GCA_014197245.1",
                "taxid": 1835722,
                "species_taxid": 1835722,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 557,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter piscis",
                "strain": "strain=NST-14",
                "accession": "GCA_018760735.1",
                "taxid": 2839984,
                "species_taxid": 2839984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4692,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter armeniacus",
                "strain": "strain=BT189",
                "accession": "GCA_014699055.1",
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                "species_taxid": 2771358,
                "relation_to_type": "type",
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                "ani": 75.1933,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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            {
                "accession": "GCF_002934605.1",
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                "matched_fragments": 1784,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003390915.1",
                "gtdb_species": "s__Lewinella_A sp003390915",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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            },
            {
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
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        "facultative_respiration": null,
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        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Neolewinella",
        "xylanilytica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}