{ "type": "genome", "identifier": "GCF_002934625.1", "organism": "Kineococcus xinjiangensis", "title": "Kineococcus xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002934625.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621109", "wgs_master": "PTJD00000000.1", "refseq_category": "reference genome", "taxid": "512762", "species_taxid": "512762", "organism_name": "Kineococcus xinjiangensis", "infraspecific_name": "strain=DSM 22857", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/21", "asm_name": "ASM293462v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002934625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/934/625/GCF_002934625.1_ASM293462v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4617682", "genome_size_ungapped": "4617682", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002934625.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4210", "protein_coding_gene_count": "4108", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-21", "dateModified": "2018-02-21", "datePublished": "2018-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Kineococcus xinjiangensis" ], "sample_taxid": [ "512762" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.206 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4617682", "Number of Sequences": "42", "Longest Sequences (bp)": "669485", "N50 (bp)": "275085", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.6", "Number of CDSs": "4197", "Average Protein Length": "329.6", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kineococcus xinjiangensis", "strain": "strain=DSM 22857", "accession": "GCA_002934625.1", "taxid": 512762, "species_taxid": 512762, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1514, "total_fragments": 1517, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kineococcus indalonis", "strain": "strain=T90", "accession": "GCA_009906395.1", "taxid": 2696566, "species_taxid": 2696566, "relation_to_type": "type", "validated": true, "ani": 80.7806, "matched_fragments": 566, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus vitellinus", "strain": "strain=T13", "accession": "GCA_009906315.1", "taxid": 2696565, "species_taxid": 2696565, "relation_to_type": "type", "validated": true, "ani": 80.1212, "matched_fragments": 670, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus radiotolerans", "strain": "strain=SRS30216", "accession": "GCA_000017305.1", "taxid": 131568, "species_taxid": 131568, "relation_to_type": "type", "validated": true, "ani": 79.8764, "matched_fragments": 722, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus rubinsiae", "strain": "strain=B12", "accession": "GCA_011839805.1", "taxid": 2609562, "species_taxid": 2609562, "relation_to_type": "type", "validated": true, "ani": 79.7374, "matched_fragments": 710, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus aurantiacus", "strain": "strain=DSM 7487", "accession": "GCA_013409345.1", "taxid": 37633, "species_taxid": 37633, "relation_to_type": "type", "validated": true, "ani": 79.6165, "matched_fragments": 695, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus siccus", "strain": "strain=R8", "accession": "GCA_009906795.1", "taxid": 2696567, "species_taxid": 2696567, "relation_to_type": "type", "validated": true, "ani": 79.5525, "matched_fragments": 635, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus rhizosphaerae", "strain": "strain=DSM 19711", "accession": "GCA_003002055.1", "taxid": 559628, "species_taxid": 559628, "relation_to_type": "type", "validated": true, "ani": 79.2236, "matched_fragments": 695, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia yuyongxinii", "strain": "strain=Z443", "accession": "GCA_006352065.1", "taxid": 2589797, "species_taxid": 2589797, "relation_to_type": "type", "validated": true, "ani": 77.33, "matched_fragments": 390, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas shaoxiangyii", "strain": "strain=Z28", "accession": "GCA_004798685.1", "taxid": 2566013, "species_taxid": 2566013, "relation_to_type": "type", "validated": true, "ani": 77.1653, "matched_fragments": 433, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium kibberense", "strain": "strain=DSM 17687", "accession": "GCA_006519705.1", "taxid": 282060, "species_taxid": 282060, "relation_to_type": "type", "validated": true, "ani": 77.1442, "matched_fragments": 344, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas oligotrophica", "strain": "strain=DSM 24482", "accession": "GCA_013409875.1", "taxid": 931536, "species_taxid": 931536, "relation_to_type": "type", "validated": true, "ani": 77.1358, "matched_fragments": 468, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 77.117, "matched_fragments": 377, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 77.1137, "matched_fragments": 370, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 77.0236, "matched_fragments": 464, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 76.9857, "matched_fragments": 458, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 76.9733, "matched_fragments": 471, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.9475, "matched_fragments": 450, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 76.9063, "matched_fragments": 430, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8613, "matched_fragments": 507, 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