{ "type": "genome", "identifier": "GCF_002938435.1", "organism": "Blastococcus saxobsidens", "title": "Blastococcus saxobsidens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northumbria University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002938435.1", "bioproject": "PRJNA224116", "biosample": "SAMN08335874", "wgs_master": "POQT00000000.1", "refseq_category": "na", "taxid": "138336", "species_taxid": "138336", "organism_name": "Blastococcus saxobsidens", "infraspecific_name": "strain=DSM 44509", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/22", "asm_name": "ASM293843v1", "asm_submitter": "Northumbria University", "gbrs_paired_asm": "GCA_002938435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/938/435/GCF_002938435.1_ASM293843v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4523459", "genome_size_ungapped": "4523459", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002938435.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "4428", "protein_coding_gene_count": "4304", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-22", "dateModified": "2018-02-22", "datePublished": "2018-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Blastococcus saxobsidens" ], "sample_taxid": [ "138336" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malta" ], "sample_host_location_id": [], "data_size": "1.195 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4523459", "Number of Sequences": "86", "Longest Sequences (bp)": "266109", "N50 (bp)": "101230", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.5", "Number of CDSs": "4315", "Average Protein Length": "310.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastococcus saxobsidens", "strain": "strain=DSM 44509", "accession": "GCA_002938435.1", "taxid": 138336, "species_taxid": 138336, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1452, "total_fragments": 1461, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blastococcus saxobsidens", "strain": "strain=DSM 44509", "accession": "GCA_004217455.1", "taxid": 138336, "species_taxid": 138336, "relation_to_type": "type", "validated": true, "ani": 99.9949, "matched_fragments": 1456, "total_fragments": 1461, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blastococcus atacamensis", "strain": "strain=P6", "accession": "GCA_002938425.1", "taxid": 2070508, "species_taxid": 2070508, "relation_to_type": "type", "validated": true, "ani": 85.8352, "matched_fragments": 924, "total_fragments": 1461, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus xanthinilyticus", "strain": "strain=DSM 46842", "accession": "GCA_008124835.1", "taxid": 1564164, "species_taxid": 1564164, "relation_to_type": "type", "validated": true, "ani": 85.2957, "matched_fragments": 1010, "total_fragments": 1461, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus aggregatus", "strain": "strain=DSM 4725", "accession": "GCA_900221005.1", "taxid": 38502, "species_taxid": 38502, "relation_to_type": "type", "validated": true, "ani": 83.9221, "matched_fragments": 914, "total_fragments": 1461, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus litoris", "strain": "strain=GP-S2-8", "accession": "GCA_003075095.1", "taxid": 2171622, "species_taxid": 2171622, "relation_to_type": "type", "validated": true, "ani": 83.7196, "matched_fragments": 958, "total_fragments": 1461, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus telluris", "strain": "strain=DSM 45421", "accession": "GCA_900102745.1", "taxid": 1190417, "species_taxid": 1190417, "relation_to_type": "type", "validated": true, "ani": 82.9603, "matched_fragments": 900, "total_fragments": 1461, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus chilensis", "strain": "strain=B12", 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