{ "type": "genome", "identifier": "GCF_002939885.1", "organism": "Xanthomonas cucurbitae", "title": "Xanthomonas cucurbitae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002939885.1", "bioproject": "PRJNA224116", "biosample": "SAMN05560221", "wgs_master": "MDED00000000.1", "refseq_category": "na", "taxid": "56453", "species_taxid": "56453", "organism_name": "Xanthomonas cucurbitae", "infraspecific_name": "strain=CFBP2542", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/23", "asm_name": "ASM293988v1", "asm_submitter": "INRA", "gbrs_paired_asm": "GCA_002939885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/939/885/GCF_002939885.1_ASM293988v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4424197", "genome_size_ungapped": "4424089", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "181", "contig_count": "181", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002939885.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3841", "protein_coding_gene_count": "3578", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-23", "dateModified": "2018-02-23", "datePublished": "2018-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonas cucurbitae" ], "sample_taxid": [ "56453" ], "sample_host_organism": [ "Cucurbita maxima" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "1.216 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4424197", "Number of Sequences": "181", "Longest Sequences (bp)": "263151", "N50 (bp)": "105102", "Gap Ratio (%)": "0.002645", "GCcontent (%)": "65.4", "Number of CDSs": "3684", "Average Protein Length": "340.9", "Coding Ratio (%)": "85.2", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xanthomonas cucurbitae", "strain": "strain=CFBP2542", "accession": "GCA_002939885.1", "taxid": 56453, "species_taxid": 56453, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1401, "total_fragments": 1406, "ani_threshold": 95, "status": "conclusive" }, { 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86.2849, "matched_fragments": 1169, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas oryzae", "strain": "strain=ATCC 35933", "accession": "GCA_000482445.1", "taxid": 347, "species_taxid": 347, "relation_to_type": "type", "validated": true, "ani": 85.689, "matched_fragments": 994, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas oryzae", "strain": "strain=ICMP3125", "accession": "GCA_004136375.1", "taxid": 347, "species_taxid": 347, "relation_to_type": "type", "validated": true, "ani": 85.4731, "matched_fragments": 1057, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002939885.1", "gtdb_species": "s__Xanthomonas cucurbitae", "ani": 100.0, "matched_fragments": 1401, "total_fragments": 1406, "gtdb_taxonomy": 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