{
    "type": "genome",
    "identifier": "GCF_002940085.1",
    "organism": "Xanthomonas sacchari",
    "title": "Xanthomonas sacchari",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INRA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002940085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05560313",
        "wgs_master": "MDEK00000000.1",
        "refseq_category": "na",
        "taxid": "56458",
        "species_taxid": "56458",
        "organism_name": "Xanthomonas sacchari",
        "infraspecific_name": "strain=CFBP4641",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/02/23",
        "asm_name": "ASM294008v1",
        "asm_submitter": "INRA",
        "gbrs_paired_asm": "GCA_002940085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/940/085/GCF_002940085.1_ASM294008v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4918229",
        "genome_size_ungapped": "4918229",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "57",
        "contig_count": "57",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002940085.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "4217",
        "protein_coding_gene_count": "4120",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-02-23",
    "dateModified": "2018-02-23",
    "datePublished": "2018-02-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xanthomonas sacchari"
        ],
        "sample_taxid": [
            "56458"
        ],
        "sample_host_organism": [
            "Saccharum officinarum"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Guadeloupe"
        ],
        "sample_host_location_id": [],
        "data_size": "1.320 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4918229",
        "Number of Sequences": "57",
        "Longest Sequences (bp)": "482729",
        "N50 (bp)": "222197",
        "Gap Ratio (%)": "0.000122",
        "GCcontent (%)": "69.1",
        "Number of CDSs": "4156",
        "Average Protein Length": "344.5",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Xanthomonas indica",
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                "accession": "GCA_022669045.1",
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                "species_taxid": 2912242,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Xanthomonas hyacinthi",
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                "species_taxid": 56455,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hyacinthi",
                "strain": "strain=CFBP1156",
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                "species_taxid": 56455,
                "relation_to_type": "type",
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                "ani": 88.7407,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas translucens",
                "strain": "strain=DSM 18974",
                "accession": "GCA_000331775.1",
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                "relation_to_type": "type",
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                "ani": 88.3393,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas translucens",
                "strain": "strain=ATCC 19319",
                "accession": "GCA_020880735.1",
                "taxid": 343,
                "species_taxid": 343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3209,
                "matched_fragments": 985,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas theicola",
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                "accession": "GCA_002940605.1",
                "taxid": 56464,
                "species_taxid": 56464,
                "relation_to_type": "type",
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                "ani": 88.1827,
                "matched_fragments": 1008,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas theicola",
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                "accession": "GCA_014236795.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Xanthomonas albilineans",
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                "accession": "GCA_002939705.1",
                "taxid": 29447,
                "species_taxid": 29447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2057,
                "matched_fragments": 911,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hydrangeae",
                "strain": "strain=LMG 31884",
                "accession": "GCA_905142475.1",
                "taxid": 2775159,
                "species_taxid": 2775159,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas citri",
                "strain": "strain=ICMP5732",
                "accession": "GCA_021474205.1",
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                "species_taxid": 346,
                "relation_to_type": "pathovar",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hortorum",
                "strain": "strain=CFBP 2533",
                "accession": "GCA_021353095.1",
                "taxid": 56454,
                "species_taxid": 56454,
                "relation_to_type": "pathovar",
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                "ani": 81.8649,
                "matched_fragments": 981,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas_A",
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                "mean_intra_species_ani": "97.45",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}