{ "type": "genome", "identifier": "GCF_002946835.1", "organism": "Streptomyces dengpaensis", "title": "Streptomyces dengpaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Unversity of Jinan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002946835.1", "bioproject": "PRJNA224116", "biosample": "SAMN08469739", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2049881", "species_taxid": "2049881", "organism_name": "Streptomyces dengpaensis", "infraspecific_name": "strain=XZHG99", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/22", "asm_name": "ASM294683v1", "asm_submitter": "Unversity of Jinan", "gbrs_paired_asm": "GCA_002946835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/946/835/GCF_002946835.1_ASM294683v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8710171", "genome_size_ungapped": "8710171", "gc_percent": "70.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002946835.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "8144", "protein_coding_gene_count": "7606", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-22", "dateModified": "2018-02-22", "datePublished": "2018-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces dengpaensis" ], "sample_taxid": [ "2049881" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dengpa District, Tibet Autonomous Region" ], "sample_host_location_id": [], "data_size": "2.359 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8710171", "Number of Sequences": "3", "Longest Sequences (bp)": "8541354", "N50 (bp)": "8541354", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "8160", "Average Protein Length": "306.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "18", "Number of tRNAs": "82", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces dengpaensis", "strain": "strain=XZHG99", "accession": "GCA_002946835.1", "taxid": 2049881, "species_taxid": 2049881, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2901, 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{ "organism_name": "Streptomyces populi", "strain": "strain=A249", "accession": "GCA_002911015.1", "taxid": 2058924, "species_taxid": 2058924, "relation_to_type": "type", "validated": true, "ani": 86.4543, "matched_fragments": 1708, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=DSM 46492", "accession": "GCA_001514135.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 86.3357, "matched_fragments": 1778, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=NBRC 14893", "accession": "GCA_005405965.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 86.3036, "matched_fragments": 1845, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=MA-4680", "accession": "GCA_000968255.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 86.2899, "matched_fragments": 1819, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 84.6807, "matched_fragments": 1756, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 84.6658, "matched_fragments": 1560, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces glomeratus", "strain": "strain=DSM 41457", "accession": "GCA_021462825.1", 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"relation_to_type": "type", "validated": true, "ani": 84.2593, "matched_fragments": 1712, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseicoloratus", "strain": "strain=TRM S81-3", "accession": "GCA_014534645.1", "taxid": 2752516, "species_taxid": 2752516, "relation_to_type": "type", "validated": true, "ani": 84.1345, "matched_fragments": 1609, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 83.7341, "matched_fragments": 1313, "total_fragments": 2902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces galbus", "strain": "strain=JCM 4639", "accession": "GCA_014650535.1", "taxid": 33898, "species_taxid": 33898, "relation_to_type": "type", "validated": true, 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