{
    "tc_result": [
        {
            "organism_name": "Shigella flexneri 2a",
            "strain": "strain=ATCC 29903",
            "accession": "GCA_002950215.1",
            "taxid": 42897,
            "species_taxid": 623,
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            "total_fragments": 1645,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=ATCC 29930",
            "accession": "GCA_002950395.1",
            "taxid": 624,
            "species_taxid": 624,
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            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=NCTC12984",
            "accession": "GCA_900457155.1",
            "taxid": 624,
            "species_taxid": 624,
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            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
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            "accession": "GCA_003572535.1",
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            "species_taxid": 621,
            "relation_to_type": "type",
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        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=NCTC12985",
            "accession": "GCA_900457095.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
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            "ani": 97.8231,
            "matched_fragments": 1263,
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            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=FDAARGOS_1139",
            "accession": "GCA_016726285.1",
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            "relation_to_type": "type",
            "validated": true,
            "ani": 97.7816,
            "matched_fragments": 1282,
            "total_fragments": 1645,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella dysenteriae",
            "strain": "strain=ATCC 13313",
            "accession": "GCA_002949675.1",
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            "species_taxid": 622,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 97.0017,
            "matched_fragments": 1240,
            "total_fragments": 1645,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella dysenteriae",
            "strain": "strain=NCTC4837",
            "accession": "GCA_900457215.1",
            "taxid": 622,
            "species_taxid": 622,
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            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=DSM 30083",
            "accession": "GCA_024519395.1",
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            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=ATCC 11775",
            "accession": "GCA_000734955.1",
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            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 96.365,
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            "total_fragments": 1645,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=ATCC 11775",
            "accession": "GCA_003697165.2",
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            "species_taxid": 562,
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            "ani": 96.3607,
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            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=DSM 17582",
            "accession": "GCA_022833075.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
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            "ani": 89.9058,
            "matched_fragments": 1159,
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            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=NBRC 107761",
            "accession": "GCA_000759775.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
            "validated": true,
            "ani": 89.7504,
            "matched_fragments": 1078,
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            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Pseudocitrobacter corydidari",
            "strain": "",
            "accession": "GCA_021172065.1",
            "taxid": 2891570,
            "species_taxid": 2891570,
            "relation_to_type": "type",
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            "ani": 82.1393,
            "matched_fragments": 824,
            "total_fragments": 1645,
            "ani_threshold": 95,
            "status": "below_threshold"
        }
    ],
    "cc_result": {
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0
    },
    "gtdb_result": [
        {
            "accession": "GCF_003697165.2",
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            "matched_fragments": 1279,
            "total_fragments": 1645,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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            "status": "conclusive"
        },
        {
            "accession": "GCF_002965065.1",
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            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
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            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_902498915.1",
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            "min_intra_species_af": "0.86",
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            "status": "-"
        },
        {
            "accession": "GCF_004211955.1",
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            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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            "mean_intra_species_af": "1.00",
            "min_intra_species_af": "1.00",
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            "status": "-"
        },
        {
            "accession": "GCF_005843885.1",
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            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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            "mean_intra_species_ani": "96.83",
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            "min_intra_species_af": "0.80",
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        },
        {
            "accession": "GCF_011881725.1",
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            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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            "mean_intra_species_ani": "N/A",
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            "min_intra_species_af": "N/A",
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        },
        {
            "accession": "GCF_001660175.1",
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        },
        {
            "accession": "GCF_000026225.1",
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            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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            "mean_intra_species_ani": "98.80",
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            "num_clustered_genomes": 77,
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        },
        {
            "accession": "GCF_002900365.1",
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            "total_fragments": 1645,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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            "mean_intra_species_ani": "99.02",
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            "min_intra_species_af": "0.85",
            "num_clustered_genomes": 82,
            "status": "-"
        },
        {
            "accession": "GCF_000759775.1",
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            "total_fragments": 1645,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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            "mean_intra_species_ani": "98.47",
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            "min_intra_species_af": "0.82",
            "num_clustered_genomes": 107,
            "status": "-"
        },
        {
            "accession": "GCF_000981805.1",
            "gtdb_species": "s__Citrobacter_A amalonaticus_C",
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            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_004342285.1",
            "gtdb_species": "s__Klebsiella sp004342285",
            "ani": 80.8975,
            "matched_fragments": 710,
            "total_fragments": 1645,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        }
    ]
}