{ "type": "genome", "identifier": "GCF_002951875.1", "organism": "Paenibacillus larvae subsp. larvae", "title": "Paenibacillus larvae subsp. larvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Leibniz Institute DSMZ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002951875.1", "bioproject": "PRJNA224116", "biosample": "SAMN06166872", "wgs_master": "na", "refseq_category": "na", "taxid": "147375", "species_taxid": "1464", "organism_name": "Paenibacillus larvae subsp. larvae", "infraspecific_name": "strain=ERIC_I", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/20", "asm_name": "ASM295187v1", "asm_submitter": "Leibniz Institute DSMZ", "gbrs_paired_asm": "GCA_002951875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/951/875/GCF_002951875.1_ASM295187v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4288947", "genome_size_ungapped": "4288947", "gc_percent": "44.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "4470", "protein_coding_gene_count": "4101", "non_coding_gene_count": "108", "pubmed_id": "31959580" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-20", "dateModified": "2018-02-20", "datePublished": "2018-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus larvae subsp. larvae" ], "sample_taxid": [ "147375" ], "sample_host_organism": [ "honeybees" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.220 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4288947", "Number of Sequences": "1", "Longest Sequences (bp)": "4288947", "N50 (bp)": "4288947", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.2", "Number of CDSs": "4470", "Average Protein Length": "261.8", "Coding Ratio (%)": "81.8", "Number of rRNAs": "24", "Number of tRNAs": "79", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus larvae subsp. larvae", "strain": "strain=ERIC_I", "accession": "GCA_002951875.1", "taxid": 147375, "species_taxid": 1464, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus eucommiae", "strain": "strain=DSM 26048", "accession": "GCA_017874215.1", "taxid": 1355755, "species_taxid": 1355755, "relation_to_type": "type", "validated": true, "ani": 76.8999, "matched_fragments": 70, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus anseongense", "strain": "strain=MAH-34", "accession": "GCA_009757995.1", "taxid": 2682845, "species_taxid": 2682845, "relation_to_type": "type", "validated": true, "ani": 76.883, "matched_fragments": 71, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002003265.1", "gtdb_species": "s__Paenibacillus_H larvae", "ani": 99.9716, "matched_fragments": 1416, "total_fragments": 1429, "gtdb_taxonomy": 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