{ "type": "genome", "identifier": "GCF_002954225.1", "organism": "Arthrobacter ruber", "title": "Arthrobacter ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002954225.1", "bioproject": "PRJNA224116", "biosample": "SAMN07481816", "wgs_master": "PPTH00000000.1", "refseq_category": "reference genome", "taxid": "1258893", "species_taxid": "1258893", "organism_name": "Arthrobacter ruber", "infraspecific_name": "strain=MDB1-42", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/27", "asm_name": "ASM295422v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_002954225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/954/225/GCF_002954225.1_ASM295422v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3655669", "genome_size_ungapped": "3655669", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002954225.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3401", "protein_coding_gene_count": "3320", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-27", "dateModified": "2018-02-27", "datePublished": "2018-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter ruber" ], "sample_taxid": [ "1258893" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3655669", "Number of Sequences": "18", "Longest Sequences (bp)": "633115", "N50 (bp)": "427417", "Gap Ratio (%)": "0.000274", "GCcontent (%)": "69.0", "Number of CDSs": "3375", "Average Protein Length": "321.2", "Coding Ratio (%)": "89.0", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter ruber", "strain": "strain=MDB1-42", "accession": "GCA_002954225.1", "taxid": 1258893, "species_taxid": 1258893, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.5742, "matched_fragments": 370, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.5595, "matched_fragments": 378, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter gallicola", "strain": "strain=Sa2CUA1", "accession": "GCA_014836775.1", "taxid": 2762225, "species_taxid": 2762225, "relation_to_type": "type", "validated": true, "ani": 78.103, "matched_fragments": 312, "total_fragments": 1209, "ani_threshold": 95, "status": 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