{ "type": "genome", "identifier": "GCF_002954645.1", "organism": "Polaribacter gangjinensis", "title": "Polaribacter gangjinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Atmosphere and Ocean Research Institute, The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002954645.1", "bioproject": "PRJNA224116", "biosample": "SAMN06133456", "wgs_master": "MSCL00000000.1", "refseq_category": "na", "taxid": "574710", "species_taxid": "574710", "organism_name": "Polaribacter gangjinensis", "infraspecific_name": "strain=KCTC 22729", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/27", "asm_name": "ASM295464v1", "asm_submitter": "Atmosphere and Ocean Research Institute, The University of Tokyo", "gbrs_paired_asm": "GCA_002954645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/954/645/GCF_002954645.1_ASM295464v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2943061", "genome_size_ungapped": "2902753", "gc_percent": "31.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002954645.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "2581", "protein_coding_gene_count": "2522", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-27", "dateModified": "2018-02-27", "datePublished": "2018-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter gangjinensis" ], "sample_taxid": [ "574710" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.794 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2943061", "Number of Sequences": "2", "Longest Sequences (bp)": "2937378", "N50 (bp)": "2937378", "Gap Ratio (%)": "1.369594", "GCcontent (%)": "31.5", "Number of CDSs": "2532", "Average Protein Length": "348.3", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter gangjinensis", "strain": "strain=KCTC 22729", "accession": "GCA_002954645.1", "taxid": 574710, "species_taxid": 574710, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 78.5984, "matched_fragments": 456, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 78.5607, "matched_fragments": 440, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 78.539, "matched_fragments": 464, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 78.5244, "matched_fragments": 437, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aestuariivivens", "strain": "strain=DBTF-3", "accession": "GCA_005885675.1", "taxid": 2304626, "species_taxid": 2304626, "relation_to_type": "type", "validated": true, "ani": 78.4629, "matched_fragments": 453, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 78.4302, "matched_fragments": 411, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", 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2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 78.3251, "matched_fragments": 427, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 78.1427, "matched_fragments": 431, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter litorisediminis", "strain": "strain=OITF-11", "accession": "GCA_019968605.1", "taxid": 1908341, "species_taxid": 1908341, "relation_to_type": "type", "validated": true, "ani": 78.0952, "matched_fragments": 450, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002954645.1", "gtdb_species": 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