{ "type": "genome", "identifier": "GCF_002954665.1", "organism": "Polaribacter glomeratus", "title": "Polaribacter glomeratus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Atmosphere and Ocean Research Institute, The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002954665.1", "bioproject": "PRJNA224116", "biosample": "SAMN06133459", "wgs_master": "MSCM00000000.1", "refseq_category": "reference genome", "taxid": "102", "species_taxid": "102", "organism_name": "Polaribacter glomeratus", "infraspecific_name": "strain=ATCC 43844", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/27", "asm_name": "ASM295466v1", "asm_submitter": "Atmosphere and Ocean Research Institute, The University of Tokyo", "gbrs_paired_asm": "GCA_002954665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/954/665/GCF_002954665.1_ASM295466v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4064562", "genome_size_ungapped": "4001588", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002954665.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3474", "protein_coding_gene_count": "3404", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-27", "dateModified": "2018-02-27", "datePublished": "2018-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter glomeratus" ], "sample_taxid": [ "102" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.097 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4064562", "Number of Sequences": "4", "Longest Sequences (bp)": "2402224", "N50 (bp)": "2402224", "Gap Ratio (%)": "1.549343", "GCcontent (%)": "30.6", "Number of CDSs": "3429", "Average Protein Length": "341.5", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter glomeratus", "strain": "strain=ATCC 43844", "accession": "GCA_002954665.1", "taxid": 102, "species_taxid": 102, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 80.5541, "matched_fragments": 636, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter atrinae", "strain": "strain=KACC 17473", "accession": "GCA_001640115.1", "taxid": 1333662, "species_taxid": 1333662, "relation_to_type": "type", "validated": true, "ani": 80.4747, "matched_fragments": 630, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 80.3785, "matched_fragments": 635, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 80.2328, "matched_fragments": 642, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 80.1779, "matched_fragments": 640, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter litorisediminis", "strain": "strain=OITF-11", "accession": "GCA_019968605.1", "taxid": 1908341, "species_taxid": 1908341, "relation_to_type": "type", "validated": true, "ani": 80.0878, "matched_fragments": 704, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", 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