{
    "type": "genome",
    "identifier": "GCF_002959775.1",
    "organism": "Veillonella rogosae JCM 15642",
    "title": "Veillonella rogosae JCM 15642",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Health Sciences University of Hokkaido",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002959775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00090159",
        "wgs_master": "PPCX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1298595",
        "species_taxid": "423477",
        "organism_name": "Veillonella rogosae JCM 15642",
        "infraspecific_name": "strain=JCM 15642",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/02/27",
        "asm_name": "ASM295977v1",
        "asm_submitter": "Health Sciences University of Hokkaido",
        "gbrs_paired_asm": "GCA_002959775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/959/775/GCF_002959775.1_ASM295977v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2187106",
        "genome_size_ungapped": "2187106",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002959775.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2042",
        "protein_coding_gene_count": "1960",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-02-27",
    "dateModified": "2018-02-27",
    "datePublished": "2018-02-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Veillonella rogosae JCM 15642"
        ],
        "sample_taxid": [
            "1298595"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.619 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2187106",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "561265",
        "N50 (bp)": "175154",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.9",
        "Number of CDSs": "2005",
        "Average Protein Length": "315.5",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "8",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Veillonella rogosae",
                "strain": "strain=JCM 15642",
                "accession": "GCA_002959775.1",
                "taxid": 423477,
                "species_taxid": 423477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 721,
                "total_fragments": 722,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Veillonella rogosae",
                "strain": "strain=JCM 15642",
                "accession": "GCA_001312485.1",
                "taxid": 423477,
                "species_taxid": 423477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.7846,
                "matched_fragments": 682,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Veillonella nakazawae",
                "strain": "strain=T1-7",
                "accession": "GCA_013393365.1",
                "taxid": 2682456,
                "species_taxid": 2682456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2776,
                "matched_fragments": 600,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella infantium",
                "strain": "strain=T11011-4",
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                "taxid": 1911679,
                "species_taxid": 1911679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9179,
                "matched_fragments": 593,
                "total_fragments": 722,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella dispar",
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                "accession": "GCA_900637515.1",
                "taxid": 39778,
                "species_taxid": 39778,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.2027,
                "matched_fragments": 599,
                "total_fragments": 722,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella dispar",
                "strain": "strain=ATCC 17748",
                "accession": "GCA_000160015.1",
                "taxid": 39778,
                "species_taxid": 39778,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.9815,
                "matched_fragments": 611,
                "total_fragments": 722,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella parvula",
                "strain": "strain=NCTC11810",
                "accession": "GCA_900186885.1",
                "taxid": 29466,
                "species_taxid": 29466,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.217,
                "matched_fragments": 578,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella parvula",
                "strain": "strain=DSM 2008",
                "accession": "GCA_000024945.1",
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                "species_taxid": 29466,
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                "validated": true,
                "ani": 87.1701,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_002959775.1",
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                "matched_fragments": 721,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
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                "min_intra_species_ani": "95.91",
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            },
            {
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                "num_clustered_genomes": 2,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "JCM",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}