{ "tc_result": [ { "organism_name": "Veillonella atypica", "strain": "strain=ATCC 17744", "accession": "GCA_002959915.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 671, "total_fragments": 673, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella atypica", "strain": "strain=NCTC11830", "accession": "GCA_900460235.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 99.9937, "matched_fragments": 667, "total_fragments": 673, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella atypica", "strain": "strain=KON", "accession": "GCA_000318355.2", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 99.9498, "matched_fragments": 645, "total_fragments": 673, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella tobetsuensis", "strain": "strain=ATCC BAA-2400", "accession": "GCA_001078375.1", "taxid": 1110546, "species_taxid": 1110546, "relation_to_type": "type", "validated": true, "ani": 88.8434, "matched_fragments": 552, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=ATCC 17748", "accession": "GCA_000160015.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 84.3093, "matched_fragments": 433, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=NCTC11831", "accession": "GCA_900637515.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 84.1958, "matched_fragments": 449, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella infantium", "strain": "strain=T11011-4", "accession": "GCA_002959895.1", "taxid": 1911679, "species_taxid": 1911679, "relation_to_type": "type", "validated": true, "ani": 83.9247, "matched_fragments": 440, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella rogosae", "strain": "strain=JCM 15642", "accession": "GCA_001312485.1", "taxid": 423477, "species_taxid": 423477, "relation_to_type": "type", "validated": true, "ani": 83.1009, "matched_fragments": 403, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella parvula", "strain": "strain=DSM 2008", "accession": "GCA_000024945.1", "taxid": 29466, "species_taxid": 29466, "relation_to_type": "suspected-type", "validated": true, "ani": 82.7679, "matched_fragments": 416, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella caviae", "strain": "strain=DSM 20738", "accession": "GCA_003992125.1", "taxid": 248316, "species_taxid": 248316, "relation_to_type": "type", "validated": true, "ani": 81.1086, "matched_fragments": 337, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002959915.1", "gtdb_species": "s__Veillonella atypica", "ani": 100.0, "matched_fragments": 669, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 34, "status": "conclusive" }, { "accession": "GCA_905214495.1", "gtdb_species": "s__Veillonella sp905214495", "ani": 94.347, "matched_fragments": 460, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001078375.1", "gtdb_species": "s__Veillonella tobetsuensis", "ani": 88.8434, "matched_fragments": 552, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "97.11", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_900550175.1", "gtdb_species": "s__Veillonella sp900550175", "ani": 84.3596, "matched_fragments": 319, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002959755.1", "gtdb_species": "s__Veillonella sp002959755", "ani": 84.0251, "matched_fragments": 437, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900549845.1", "gtdb_species": "s__Veillonella sp900549845", "ani": 84.0233, "matched_fragments": 305, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002959895.1", "gtdb_species": "s__Veillonella infantium", "ani": 83.9457, "matched_fragments": 439, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.95", "min_intra_species_ani": "95.95", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900538355.1", "gtdb_species": "s__Veillonella sp900538355", "ani": 83.8, "matched_fragments": 425, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900765235.1", "gtdb_species": "s__Veillonella sp900765235", "ani": 82.9102, "matched_fragments": 248, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024945.1", "gtdb_species": "s__Veillonella parvula", "ani": 82.7813, "matched_fragments": 415, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.7953, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_905209685.1", "gtdb_species": "s__Veillonella sp905209685", "ani": 82.7357, "matched_fragments": 332, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.07", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900556785.1", "gtdb_species": "s__Veillonella sp900556785", "ani": 82.5914, "matched_fragments": 302, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003992125.1", "gtdb_species": "s__Veillonella caviae", "ani": 81.1086, "matched_fragments": 337, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }