{ "type": "genome", "identifier": "GCF_002968575.1", "organism": "Neorhizobium huautlense", "title": "Neorhizobium huautlense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Plant Biotechnology and Genomics UPM-INIA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002968575.1", "bioproject": "PRJNA224116", "biosample": "SAMN08554966", "wgs_master": "PVBM00000000.1", "refseq_category": "reference genome", "taxid": "67774", "species_taxid": "67774", "organism_name": "Neorhizobium huautlense", "infraspecific_name": "strain=DSM 21817", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/05", "asm_name": "ASM296857v1", "asm_submitter": "Centre for Plant Biotechnology and Genomics UPM-INIA", "gbrs_paired_asm": "GCA_002968575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/968/575/GCF_002968575.1_ASM296857v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5725939", "genome_size_ungapped": "5725939", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "146", "contig_count": "146", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002968575.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "5549", "protein_coding_gene_count": "5307", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-05", "dateModified": "2018-03-05", "datePublished": "2018-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Neorhizobium huautlense" ], "sample_taxid": [ "67774" ], "sample_host_organism": [ "Sesbania herbacea" 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{ "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 78.8286, "matched_fragments": 603, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002968575.1", "gtdb_species": "s__Neorhizobium huautlense", "ani": 100.0, "matched_fragments": 1849, "total_fragments": 1852, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_002968635.1", "gtdb_species": "s__Neorhizobium alkalisoli", "ani": 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