{ "type": "genome", "identifier": "GCF_002968995.1", "organism": "Photorhabdus hindustanensis", "title": "Photorhabdus hindustanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Vishal Somvanshi's shared submissions", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002968995.1", "bioproject": "PRJNA224116", "biosample": "SAMN08564045", "wgs_master": "PUWT00000000.1", "refseq_category": "reference genome", "taxid": "2918802", "species_taxid": "2918802", "organism_name": "Photorhabdus hindustanensis", "infraspecific_name": "strain=H1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/05", "asm_name": "ASM296899v1", "asm_submitter": "Vishal Somvanshi's shared submissions", "gbrs_paired_asm": "GCA_002968995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/968/995/GCF_002968995.1_ASM296899v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5663704", "genome_size_ungapped": "5663704", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "228", "contig_count": "228", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002968995.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "5044", "protein_coding_gene_count": "4616", "non_coding_gene_count": "136", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-05", "dateModified": "2018-03-05", "datePublished": "2018-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Photorhabdus hindustanensis" ], "sample_taxid": [ "2918802" ], "sample_host_organism": [ "Heterorhabditis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Meghalaya" ], "sample_host_location_id": [], "data_size": "1.607 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5663704", "Number of Sequences": "228", "Longest Sequences (bp)": "311890", "N50 (bp)": "92101", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.9", "Number of CDSs": "4700", "Average Protein Length": "316.9", "Coding Ratio (%)": "78.9", "Number of rRNAs": "11", "Number of tRNAs": "79", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Photorhabdus hindustanensis", "strain": "strain=H1", "accession": "GCA_002968995.1", "taxid": 2918802, 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