{
    "type": "genome",
    "identifier": "GCF_002976435.1",
    "organism": "Solimicrobium silvestre",
    "title": "Solimicrobium silvestre",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biocant",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002976435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08566068",
        "wgs_master": "PUGF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2099400",
        "species_taxid": "2099400",
        "organism_name": "Solimicrobium silvestre",
        "infraspecific_name": "strain=S20-91",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/07",
        "asm_name": "ASM297643v1",
        "asm_submitter": "Biocant",
        "gbrs_paired_asm": "GCA_002976435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/976/435/GCF_002976435.1_ASM297643v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5243257",
        "genome_size_ungapped": "5243257",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "67",
        "contig_count": "67",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002976435.1-RS_2024_04_15",
        "annotation_date": "2024-04-15",
        "total_gene_count": "4722",
        "protein_coding_gene_count": "4619",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-07",
    "dateModified": "2018-03-07",
    "datePublished": "2018-03-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Solimicrobium silvestre"
        ],
        "sample_taxid": [
            "2099400"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: South Tyrol, Alps"
        ],
        "sample_host_location_id": [],
        "data_size": "1.495 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5243257",
        "Number of Sequences": "67",
        "Longest Sequences (bp)": "571580",
        "N50 (bp)": "172875",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.7",
        "Number of CDSs": "4603",
        "Average Protein Length": "324.2",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Solimicrobium silvestre",
                "strain": "strain=S20-91",
                "accession": "GCA_002976435.1",
                "taxid": 2099400,
                "species_taxid": 2099400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1713,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sapientia aquatica",
                "strain": "strain=SA-152",
                "accession": "GCA_004358105.1",
                "taxid": 1549640,
                "species_taxid": 1549640,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0896,
                "matched_fragments": 396,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium rivi",
                "strain": "strain=FT147W",
                "accession": "GCA_018139565.1",
                "taxid": 2828729,
                "species_taxid": 2828729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8555,
                "matched_fragments": 124,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium aquatile",
                "strain": "strain=CCTCC AB 2015119",
                "accession": "GCA_014699135.1",
                "taxid": 1537398,
                "species_taxid": 1537398,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8482,
                "matched_fragments": 114,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium seohonense",
                "strain": "strain=KACC 16656",
                "accession": "GCA_014284305.1",
                "taxid": 1344950,
                "species_taxid": 1344950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7748,
                "matched_fragments": 127,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium jejuense",
                "strain": "strain=KACC 12607",
                "accession": "GCA_014284255.1",
                "taxid": 1344949,
                "species_taxid": 1344949,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7607,
                "matched_fragments": 139,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium umbellatum",
                "strain": "strain=NL8W",
                "accession": "GCA_014284125.1",
                "taxid": 2762300,
                "species_taxid": 2762300,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7451,
                "matched_fragments": 133,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium nitidum",
                "strain": "strain=LX22W",
                "accession": "GCA_014284155.1",
                "taxid": 2762298,
                "species_taxid": 2762298,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7199,
                "matched_fragments": 104,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium pigrum",
                "strain": "strain=DSM 19792",
                "accession": "GCA_003201815.1",
                "taxid": 401470,
                "species_taxid": 401470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6933,
                "matched_fragments": 129,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium rugosum",
                "strain": "strain=CY7W",
                "accession": "GCA_014284365.1",
                "taxid": 2762291,
                "species_taxid": 2762291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4964,
                "matched_fragments": 114,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium hunanense",
                "strain": "strain=CY18W",
                "accession": "GCA_014284335.1",
                "taxid": 2762292,
                "species_taxid": 2762292,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4642,
                "matched_fragments": 129,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium griseum",
                "strain": "strain=FT31W",
                "accession": "GCA_014284195.1",
                "taxid": 2762295,
                "species_taxid": 2762295,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3565,
                "matched_fragments": 106,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium curvum",
                "strain": "strain=CY22W",
                "accession": "GCA_014284235.1",
                "taxid": 2762294,
                "species_taxid": 2762294,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.29,
                "matched_fragments": 126,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Herminiimonas fonticola",
                "strain": "strain=S-94",
                "accession": "GCA_003293745.1",
                "taxid": 303380,
                "species_taxid": 303380,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2541,
                "matched_fragments": 105,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium crateris",
                "strain": "strain=B2R-29",
                "accession": "GCA_010078235.1",
                "taxid": 2528175,
                "species_taxid": 2528175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2466,
                "matched_fragments": 126,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Herminiimonas fonticola",
                "strain": "strain=DSM 18555",
                "accession": "GCA_004361795.1",
                "taxid": 303380,
                "species_taxid": 303380,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2278,
                "matched_fragments": 106,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium macrobrachii",
                "strain": "strain=KCTC 23916",
                "accession": "GCA_014652415.1",
                "taxid": 1119058,
                "species_taxid": 1119058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1655,
                "matched_fragments": 121,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Undibacterium luofuense",
                "strain": "strain=LFS511W",
                "accession": "GCA_018139685.1",
                "taxid": 2828733,
                "species_taxid": 2828733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8785,
                "matched_fragments": 102,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collimonas silvisoli",
                "strain": "strain=RXD178",
                "accession": "GCA_018305005.1",
                "taxid": 2825884,
                "species_taxid": 2825884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8412,
                "matched_fragments": 96,
                "total_fragments": 1716,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002976435.1",
                "gtdb_species": "s__Solimicrobium silvestre",
                "ani": 100.0,
                "matched_fragments": 1713,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Solimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004358105.1",
                "gtdb_species": "s__Solimicrobium aquaticum",
                "ani": 79.0838,
                "matched_fragments": 396,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Solimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903862415.1",
                "gtdb_species": "s__Solimicrobium sp903862415",
                "ani": 78.0739,
                "matched_fragments": 321,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Solimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018139565.1",
                "gtdb_species": "s__Undibacterium sp018139565",
                "ani": 77.8555,
                "matched_fragments": 124,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014699135.1",
                "gtdb_species": "s__Undibacterium aquatile",
                "ani": 77.8482,
                "matched_fragments": 114,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.29",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014284305.1",
                "gtdb_species": "s__Undibacterium seohonense",
                "ani": 77.7842,
                "matched_fragments": 128,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014284255.1",
                "gtdb_species": "s__Undibacterium jejuense",
                "ani": 77.7568,
                "matched_fragments": 140,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014284175.1",
                "gtdb_species": "s__Undibacterium sp014284175",
                "ani": 77.7197,
                "matched_fragments": 147,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003955735.1",
                "gtdb_species": "s__Undibacterium parvum",
                "ani": 77.7061,
                "matched_fragments": 145,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009937955.1",
                "gtdb_species": "s__Undibacterium sp009937955",
                "ani": 77.624,
                "matched_fragments": 134,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014284335.1",
                "gtdb_species": "s__Undibacterium sp014284335",
                "ani": 77.4704,
                "matched_fragments": 128,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Undibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903893945.1",
                "gtdb_species": "s__Solimicrobium sp903893945",
                "ani": 77.3499,
                "matched_fragments": 182,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Solimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003293745.1",
                "gtdb_species": "s__Herminiimonas fonticola",
                "ani": 77.2972,
                "matched_fragments": 105,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018305005.1",
                "gtdb_species": "s__Collimonas sp018305005",
                "ani": 76.845,
                "matched_fragments": 97,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Collimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014192645.1",
                "gtdb_species": "s__Herbaspirillum sp014192645",
                "ani": 76.836,
                "matched_fragments": 89,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003852535.1",
                "gtdb_species": "s__Herminiimonas sp003852535",
                "ani": 76.8057,
                "matched_fragments": 95,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001464355.1",
                "gtdb_species": "s__Herminiimonas sp001464355",
                "ani": 76.7333,
                "matched_fragments": 107,
                "total_fragments": 1716,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Solimicrobium",
        "silvestre"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}