{ "type": "genome", "identifier": "GCF_002980495.1", "organism": "Phyllobacterium phragmitis", "title": "Phyllobacterium phragmitis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Forestry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002980495.1", "bioproject": "PRJNA224116", "biosample": "SAMN08612570", "wgs_master": "PVBR00000000.1", "refseq_category": "reference genome", "taxid": "2670329", "species_taxid": "2670329", "organism_name": "Phyllobacterium phragmitis", "infraspecific_name": "strain=1N-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/07", "asm_name": "ASM298049v1", "asm_submitter": "Chinese Academy of Forestry", "gbrs_paired_asm": "GCA_002980495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/980/495/GCF_002980495.1_ASM298049v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5625008", "genome_size_ungapped": "5625008", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "139", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002980495.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "5484", "protein_coding_gene_count": "5228", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-07", "dateModified": "2018-03-07", "datePublished": "2018-03-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Phyllobacterium phragmitis" ], "sample_taxid": [ "2670329" ], "sample_host_organism": [ "plant" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang Province" ], "sample_host_location_id": [], "data_size": "1.579 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5625008", "Number of Sequences": "139", "Longest Sequences (bp)": "456156", "N50 (bp)": "200258", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.1", "Number of CDSs": "5328", "Average Protein Length": "301.4", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phyllobacterium phragmitis", "strain": "strain=1N-3", "accession": "GCA_002980495.1", "taxid": 2670329, "species_taxid": 2670329, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1832, "total_fragments": 1835, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phyllobacterium salinisoli", "strain": "strain=LLAN61", "accession": "GCA_003335045.1", "taxid": 1899321, "species_taxid": 1899321, "relation_to_type": "type", "validated": true, "ani": 86.0628, "matched_fragments": 1124, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium leguminum", "strain": "strain=ORS 1419", "accession": "GCA_003217235.1", "taxid": 314237, "species_taxid": 314237, "relation_to_type": "type", "validated": true, "ani": 82.969, "matched_fragments": 799, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella daejeonensis", "strain": "strain=DSM 26944", "accession": "GCA_014199265.1", "taxid": 659015, "species_taxid": 659015, "relation_to_type": "type", "validated": true, "ani": 79.0902, "matched_fragments": 522, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella melitensis", "strain": "strain=16M", "accession": "GCA_000160295.1", "taxid": 29459, "species_taxid": 29459, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4828, "matched_fragments": 424, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium myrsinacearum", "strain": "strain=DSM 5892", "accession": "GCA_002980555.1", "taxid": 28101, "species_taxid": 28101, "relation_to_type": "type", "validated": true, "ani": 78.4539, "matched_fragments": 548, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium myrsinacearum", "strain": "strain=IAM 13584", "accession": "GCA_003182235.1", "taxid": 28101, "species_taxid": 28101, "relation_to_type": "type", "validated": true, "ani": 78.4236, "matched_fragments": 546, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 78.4066, "matched_fragments": 525, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium helmanticense", "strain": "strain=CSLC115N", "accession": "GCA_003034915.1", "taxid": 1776423, "species_taxid": 1776423, "relation_to_type": "type", "validated": true, "ani": 78.3817, "matched_fragments": 527, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 78.3339, "matched_fragments": 519, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 78.3234, "matched_fragments": 446, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 78.3142, "matched_fragments": 505, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sangaii", "strain": "strain=DSM 100039", "accession": "GCA_014207355.1", "taxid": 505389, "species_taxid": 505389, "relation_to_type": "type", "validated": true, "ani": 78.2324, "matched_fragments": 510, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium carbonis", "strain": "strain=B2.3", "accession": "GCA_003970795.1", 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