{ "type": "genome", "identifier": "GCF_002982315.1", "organism": "Leucobacter massiliensis", "title": "Leucobacter massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IHU Mediteranee Infection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002982315.1", "bioproject": "PRJNA224116", "biosample": "SAMN06481177", "wgs_master": "MWZD00000000.1", "refseq_category": "reference genome", "taxid": "1686285", "species_taxid": "1686285", "organism_name": "Leucobacter massiliensis", "infraspecific_name": "strain=122RC15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/08", "asm_name": "ASM298231v1", "asm_submitter": "IHU Mediteranee Infection", "gbrs_paired_asm": "GCA_002982315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/982/315/GCF_002982315.1_ASM298231v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3136406", "genome_size_ungapped": "3136406", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002982315.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2872", "protein_coding_gene_count": "2780", "non_coding_gene_count": "53", "pubmed_id": "29204283" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-08", "dateModified": "2018-03-08", "datePublished": "2018-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter massiliensis" ], "sample_taxid": [ "1686285" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 81.1754, "matched_fragments": 491, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, "species_taxid": 2812850, "relation_to_type": "type", "validated": true, "ani": 80.5651, "matched_fragments": 440, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CPCC 202695", "accession": "GCA_004366335.2", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 78.0135, "matched_fragments": 322, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 77.9643, "matched_fragments": 277, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Humibacter ginsenosidimutans", "strain": "strain=WJ7-1", "accession": "GCA_007859675.1", "taxid": 2599293, "species_taxid": 2599293, "relation_to_type": "type", "validated": true, "ani": 77.9511, "matched_fragments": 232, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium cremeum", "strain": "strain=NY27", "accession": "GCA_015277855.1", "taxid": 2782169, "species_taxid": 2782169, "relation_to_type": "type", "validated": true, "ani": 77.8069, "matched_fragments": 311, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amnibacterium setariae", "strain": "strain=DD4a", "accession": "GCA_003581425.1", "taxid": 2306585, 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"validated": true, "ani": 76.4292, "matched_fragments": 186, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 76.0592, "matched_fragments": 237, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002982315.1", "gtdb_species": "s__Leucobacter massiliensis", "ani": 100.0, "matched_fragments": 1026, "total_fragments": 1035, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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